FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6535, 70 aa
  1>>>pF1KE6535 70 - 70 aa - 70 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3371+/-0.000278; mu= 10.8672+/- 0.017
 mean_var=43.1063+/- 8.878, 0's: 0 Z-trim(117.9): 8  B-trim: 0 in 0/52
 Lambda= 0.195346
 statistics sampled from 30327 (30335) to 30327 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.356), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(85289)
NP_004532 (OMIM: 252010,300078) NADH dehydrogenase (  70)  486 143.3 3.1e-35


>>NP_004532 (OMIM: 252010,300078) NADH dehydrogenase [ub  (70 aa)
 initn: 486 init1: 486 opt: 486  Z-score: 753.7  bits: 143.3 E(85289): 3.1e-35
Smith-Waterman score: 486; 100.0% identity (100.0% similar) in 70 aa overlap (1-70:1-70)

               10        20        30        40        50        60
pF1KE6 MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY
               10        20        30        40        50        60

               70
pF1KE6 YVSKGLENID
       ::::::::::
NP_004 YVSKGLENID
               70




70 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:11:44 2016 done: Tue Nov  8 14:11:45 2016
 Total Scan time:  3.460 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]