FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6535, 70 aa
  1>>>pF1KE6535 70 - 70 aa - 70 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3953+/-0.000537; mu= 10.6339+/- 0.032
 mean_var=42.5178+/- 8.798, 0's: 0 Z-trim(111.6): 6  B-trim: 772 in 1/50
 Lambda= 0.196693
 statistics sampled from 12468 (12473) to 12468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.383), width:  16
 Scan time:  1.260

The best scores are:                                      opt bits E(32554)
CCDS14590.1 NDUFA1 gene_id:4694|Hs108|chrX         (  70)  486 144.1 6.8e-36


>>CCDS14590.1 NDUFA1 gene_id:4694|Hs108|chrX              (70 aa)
 initn: 486 init1: 486 opt: 486  Z-score: 757.9  bits: 144.1 E(32554): 6.8e-36
Smith-Waterman score: 486; 100.0% identity (100.0% similar) in 70 aa overlap (1-70:1-70)

               10        20        30        40        50        60
pF1KE6 MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MWFEILPGLSVMGVCLLIPGLATAYIHRFTNGGKEKRVAHFGYHWSLMERDRRISGVDRY
               10        20        30        40        50        60

               70
pF1KE6 YVSKGLENID
       ::::::::::
CCDS14 YVSKGLENID
               70




70 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:11:44 2016 done: Tue Nov  8 14:11:44 2016
 Total Scan time:  1.260 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]