FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6533, 112 aa
  1>>>pF1KE6533 112 - 112 aa - 112 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1738+/-0.000305; mu= 10.2609+/- 0.019
 mean_var=67.5214+/-12.934, 0's: 0 Z-trim(117.4): 22  B-trim: 75 in 2/47
 Lambda= 0.156082
 statistics sampled from 29404 (29425) to 29404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.345), width:  16
 Scan time:  3.930

The best scores are:                                      opt bits E(85289)
NP_001823 (OMIM: 120105) colipase isoform 1 prepro ( 112)  763 180.0   7e-46
NP_001239526 (OMIM: 120105) colipase isoform 2 [Ho (  98)  598 142.8 9.7e-35
NP_001239527 (OMIM: 120105) colipase isoform 3 pre (  71)  308 77.4 3.4e-15


>>NP_001823 (OMIM: 120105) colipase isoform 1 preproprot  (112 aa)
 initn: 763 init1: 763 opt: 763  Z-score: 944.6  bits: 180.0 E(85289): 7e-46
Smith-Waterman score: 763; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KE6 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KE6 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
               70        80        90       100       110  

>>NP_001239526 (OMIM: 120105) colipase isoform 2 [Homo s  (98 aa)
 initn: 596 init1: 596 opt: 598  Z-score: 744.7  bits: 142.8 E(85289): 9.7e-35
Smith-Waterman score: 598; 91.5% identity (92.6% similar) in 94 aa overlap (19-112:5-98)

               10        20        30        40        50        60
pF1KE6 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA
                         : :   .   ::::::::::::::::::::::::::::::::
NP_001               MILLPQPPKKLGLQENGELCMNSAQCKSNCCQHSSALGLARCTSMA
                             10        20        30        40      

               70        80        90       100       110  
pF1KE6 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
         50        60        70        80        90        

>>NP_001239527 (OMIM: 120105) colipase isoform 3 preprop  (71 aa)
 initn: 461 init1: 308 opt: 308  Z-score: 393.8  bits: 77.4 E(85289): 3.4e-15
Smith-Waterman score: 383; 63.4% identity (63.4% similar) in 112 aa overlap (1-112:1-71)

               10        20        30        40        50        60
pF1KE6 MEKILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSNCCQHSSALGLARCTSMA
       ::::::::::::::::::::::::::::                                
NP_001 MEKILILLLVALSVAYAAPGPRGIIINL--------------------------------
               10        20                                        

               70        80        90       100       110  
pF1KE6 SENSECSVKTLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
                :::::::::::::::::::::::::::::::::::::::::::
NP_001 ---------TLYGIYYKCPCERGLTCEGDKTIVGSITNTNFGICHDAGRSKQ
                30        40        50        60        70 




112 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:10:21 2016 done: Tue Nov  8 14:10:22 2016
 Total Scan time:  3.930 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]