FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6532, 184 aa
  1>>>pF1KE6532 184 - 184 aa - 184 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0279+/-0.000272; mu= 14.1780+/- 0.017
 mean_var=57.5832+/-11.384, 0's: 0 Z-trim(119.1): 25  B-trim: 0 in 0/55
 Lambda= 0.169015
 statistics sampled from 32678 (32703) to 32678 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.383), width:  16
 Scan time:  5.440

The best scores are:                                      opt bits E(85289)
NP_951032 (OMIM: 252010,612911) NADH dehydrogenase ( 184) 1243 310.5 9.8e-85
NP_951047 (OMIM: 252010,612911) NADH dehydrogenase ( 127)  859 216.8 1.1e-56
NP_951056 (OMIM: 252010,612911) NADH dehydrogenase ( 127)  859 216.8 1.1e-56
NP_951033 (OMIM: 252010,612911) NADH dehydrogenase ( 127)  859 216.8 1.1e-56


>>NP_951032 (OMIM: 252010,612911) NADH dehydrogenase [ub  (184 aa)
 initn: 1243 init1: 1243 opt: 1243  Z-score: 1642.3  bits: 310.5 E(85289): 9.8e-85
Smith-Waterman score: 1243; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KE6 MATALALRSLYRARPSLRCPPVELPWAPRRGHRLSPADDELYQRTRISLLQREAAQAMYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_951 MATALALRSLYRARPSLRCPPVELPWAPRRGHRLSPADDELYQRTRISLLQREAAQAMYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_951 DSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTSLTSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_951 DRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTSLTSLG
              130       140       150       160       170       180

           
pF1KE6 QAAQ
       ::::
NP_951 QAAQ
           

>>NP_951047 (OMIM: 252010,612911) NADH dehydrogenase [ub  (127 aa)
 initn: 859 init1: 859 opt: 859  Z-score: 1138.7  bits: 216.8 E(85289): 1.1e-56
Smith-Waterman score: 859; 100.0% identity (100.0% similar) in 127 aa overlap (58-184:1-127)

        30        40        50        60        70        80       
pF1KE6 PRRGHRLSPADDELYQRTRISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVV
                                     ::::::::::::::::::::::::::::::
NP_951                               MYIDSYNSRGFMINGNRVLGPCALLPHSVV
                                             10        20        30

        90       100       110       120       130       140       
pF1KE6 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_951 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP
               40        50        60        70        80        90

       150       160       170       180    
pF1KE6 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ
       :::::::::::::::::::::::::::::::::::::
NP_951 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ
              100       110       120       

>>NP_951056 (OMIM: 252010,612911) NADH dehydrogenase [ub  (127 aa)
 initn: 859 init1: 859 opt: 859  Z-score: 1138.7  bits: 216.8 E(85289): 1.1e-56
Smith-Waterman score: 859; 100.0% identity (100.0% similar) in 127 aa overlap (58-184:1-127)

        30        40        50        60        70        80       
pF1KE6 PRRGHRLSPADDELYQRTRISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVV
                                     ::::::::::::::::::::::::::::::
NP_951                               MYIDSYNSRGFMINGNRVLGPCALLPHSVV
                                             10        20        30

        90       100       110       120       130       140       
pF1KE6 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_951 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP
               40        50        60        70        80        90

       150       160       170       180    
pF1KE6 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ
       :::::::::::::::::::::::::::::::::::::
NP_951 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ
              100       110       120       

>>NP_951033 (OMIM: 252010,612911) NADH dehydrogenase [ub  (127 aa)
 initn: 859 init1: 859 opt: 859  Z-score: 1138.7  bits: 216.8 E(85289): 1.1e-56
Smith-Waterman score: 859; 100.0% identity (100.0% similar) in 127 aa overlap (58-184:1-127)

        30        40        50        60        70        80       
pF1KE6 PRRGHRLSPADDELYQRTRISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVV
                                     ::::::::::::::::::::::::::::::
NP_951                               MYIDSYNSRGFMINGNRVLGPCALLPHSVV
                                             10        20        30

        90       100       110       120       130       140       
pF1KE6 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_951 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP
               40        50        60        70        80        90

       150       160       170       180    
pF1KE6 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ
       :::::::::::::::::::::::::::::::::::::
NP_951 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ
              100       110       120       




184 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:09:41 2016 done: Tue Nov  8 14:09:42 2016
 Total Scan time:  5.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]