FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6532, 184 aa
  1>>>pF1KE6532 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7961+/-0.000579; mu= 15.5936+/- 0.035
 mean_var=57.7596+/-11.275, 0's: 0 Z-trim(112.0): 7  B-trim: 0 in 0/51
 Lambda= 0.168757
 statistics sampled from 12844 (12847) to 12844 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.395), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS2784.1 NDUFAF3 gene_id:25915|Hs108|chr3        ( 184) 1243 310.0 5.4e-85
CCDS2785.1 NDUFAF3 gene_id:25915|Hs108|chr3        ( 127)  859 216.4 5.6e-57


>>CCDS2784.1 NDUFAF3 gene_id:25915|Hs108|chr3             (184 aa)
 initn: 1243 init1: 1243 opt: 1243  Z-score: 1639.4  bits: 310.0 E(32554): 5.4e-85
Smith-Waterman score: 1243; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KE6 MATALALRSLYRARPSLRCPPVELPWAPRRGHRLSPADDELYQRTRISLLQREAAQAMYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MATALALRSLYRARPSLRCPPVELPWAPRRGHRLSPADDELYQRTRISLLQREAAQAMYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 DSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTSLTSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 DRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTSLTSLG
              130       140       150       160       170       180

           
pF1KE6 QAAQ
       ::::
CCDS27 QAAQ
           

>>CCDS2785.1 NDUFAF3 gene_id:25915|Hs108|chr3             (127 aa)
 initn: 859 init1: 859 opt: 859  Z-score: 1136.4  bits: 216.4 E(32554): 5.6e-57
Smith-Waterman score: 859; 100.0% identity (100.0% similar) in 127 aa overlap (58-184:1-127)

        30        40        50        60        70        80       
pF1KE6 PRRGHRLSPADDELYQRTRISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVV
                                     ::::::::::::::::::::::::::::::
CCDS27                               MYIDSYNSRGFMINGNRVLGPCALLPHSVV
                                             10        20        30

        90       100       110       120       130       140       
pF1KE6 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP
               40        50        60        70        80        90

       150       160       170       180    
pF1KE6 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ
       :::::::::::::::::::::::::::::::::::::
CCDS27 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ
              100       110       120       




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:09:41 2016 done: Tue Nov  8 14:09:41 2016
 Total Scan time:  1.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]