Result of FASTA (omim) for
pFN21AE6531
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6531, 198 aa
1>>>pF1KE6531 198 - 198 aa - 198 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5834+/-0.000348; mu= 13.3282+/- 0.022
mean_var=73.9259+/-14.582, 0's: 0 Z-trim(115.3): 13 B-trim: 747 in 1/51
Lambda= 0.149168
statistics sampled from 25720 (25732) to 25720 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.302), width: 16
Scan time: 4.740
The best scores are: opt bits E(85289)
NP_777570 (OMIM: 186977) tctex1 domain-containing ( 198) 1301 288.6 4.5e-78
XP_011534395 (OMIM: 186977) PREDICTED: tctex1 doma ( 198) 1301 288.6 4.5e-78
XP_006715617 (OMIM: 186977) PREDICTED: tctex1 doma ( 138) 471 109.9 2e-24
XP_011539678 (OMIM: 611713) PREDICTED: tctex1 doma ( 221) 198 51.2 1.4e-06
XP_011539677 (OMIM: 611713) PREDICTED: tctex1 doma ( 221) 198 51.2 1.4e-06
NP_001013654 (OMIM: 611713) tctex1 domain-containi ( 221) 198 51.2 1.4e-06
XP_016856676 (OMIM: 611713) PREDICTED: tctex1 doma ( 262) 198 51.3 1.6e-06
XP_006710677 (OMIM: 611713) PREDICTED: tctex1 doma ( 279) 198 51.3 1.7e-06
>>NP_777570 (OMIM: 186977) tctex1 domain-containing prot (198 aa)
initn: 1301 init1: 1301 opt: 1301 Z-score: 1522.6 bits: 288.6 E(85289): 4.5e-78
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KE6 MEKRGRGVKSSPIQTPNQTPQQAPVTPRKERRPSMFEKEAYTQILRERLRESIHNVQYVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 MEKRGRGVKSSPIQTPNQTPQQAPVTPRKERRPSMFEKEAYTQILRERLRESIHNVQYVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PPFDDSIADIGKEWKSALAKLKFANSYRMEPLKKFQAHSVETKVQQILTESLKDVKYDDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 PPFDDSIADIGKEWKSALAKLKFANSYRMEPLKKFQAHSVETKVQQILTESLKDVKYDDK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VFSHLSLELADRILLAVKEFGYHRYKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_777 VFSHLSLELADRILLAVKEFGYHRYKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAK
130 140 150 160 170 180
190
pF1KE6 HEAESYVALVLVFALYYE
::::::::::::::::::
NP_777 HEAESYVALVLVFALYYE
190
>>XP_011534395 (OMIM: 186977) PREDICTED: tctex1 domain-c (198 aa)
initn: 1301 init1: 1301 opt: 1301 Z-score: 1522.6 bits: 288.6 E(85289): 4.5e-78
Smith-Waterman score: 1301; 100.0% identity (100.0% similar) in 198 aa overlap (1-198:1-198)
10 20 30 40 50 60
pF1KE6 MEKRGRGVKSSPIQTPNQTPQQAPVTPRKERRPSMFEKEAYTQILRERLRESIHNVQYVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MEKRGRGVKSSPIQTPNQTPQQAPVTPRKERRPSMFEKEAYTQILRERLRESIHNVQYVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PPFDDSIADIGKEWKSALAKLKFANSYRMEPLKKFQAHSVETKVQQILTESLKDVKYDDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPFDDSIADIGKEWKSALAKLKFANSYRMEPLKKFQAHSVETKVQQILTESLKDVKYDDK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VFSHLSLELADRILLAVKEFGYHRYKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VFSHLSLELADRILLAVKEFGYHRYKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAK
130 140 150 160 170 180
190
pF1KE6 HEAESYVALVLVFALYYE
::::::::::::::::::
XP_011 HEAESYVALVLVFALYYE
190
>>XP_006715617 (OMIM: 186977) PREDICTED: tctex1 domain-c (138 aa)
initn: 505 init1: 471 opt: 471 Z-score: 559.6 bits: 109.9 E(85289): 2e-24
Smith-Waterman score: 792; 69.7% identity (69.7% similar) in 198 aa overlap (1-198:1-138)
10 20 30 40 50 60
pF1KE6 MEKRGRGVKSSPIQTPNQTPQQAPVTPRKERRPSMFEKEAYTQILRERLRESIHNVQYVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEKRGRGVKSSPIQTPNQTPQQAPVTPRKERRPSMFEKEAYTQILRERLRESIHNVQYVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PPFDDSIADIGKEWKSALAKLKFANSYRMEPLKKFQAHSVETKVQQILTESLKDVKYDDK
::::::::::
XP_006 PPFDDSIADI--------------------------------------------------
70
130 140 150 160 170 180
pF1KE6 VFSHLSLELADRILLAVKEFGYHRYKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAK
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ----------DRILLAVKEFGYHRYKFIIKVLFIQKTGQAINIASRWIWDIAWDSWVAAK
80 90 100 110 120
190
pF1KE6 HEAESYVALVLVFALYYE
::::::::::::::::::
XP_006 HEAESYVALVLVFALYYE
130
>>XP_011539678 (OMIM: 611713) PREDICTED: tctex1 domain-c (221 aa)
initn: 187 init1: 146 opt: 198 Z-score: 239.1 bits: 51.2 E(85289): 1.4e-06
Smith-Waterman score: 198; 27.0% identity (65.2% similar) in 141 aa overlap (61-198:85-221)
40 50 60 70 80
pF1KE6 RRPSMFEKEAYTQILRERLRESIHNVQYVEPPFDDSIADIGKEWKSALAKLKF-ANSYRM
::. . .. : :: .. : :::
XP_011 LGLAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLP----LAPARWVAPSYRT
60 70 80 90 100 110
90 100 110 120 130 140
pF1KE6 EPL--KKFQAHSVETKVQQILTESLKDVKYDDKVFSHLSLELADRILLAVKEFGYHRYKF
::. ....: .. .. :. .:.:. :.. ..: :: ... . ..:.. :::.
XP_011 EPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKL
120 130 140 150 160 170
150 160 170 180 190
pF1KE6 IIKVLFIQKTGQAINIASRWIWDIAWDSWVAAKHEAESYVALVLVFALYYE
. .:.. ..::.....:: .::.: :. ..... : :.. : .:: :
XP_011 VCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGLYCE
180 190 200 210 220
>>XP_011539677 (OMIM: 611713) PREDICTED: tctex1 domain-c (221 aa)
initn: 187 init1: 146 opt: 198 Z-score: 239.1 bits: 51.2 E(85289): 1.4e-06
Smith-Waterman score: 198; 27.0% identity (65.2% similar) in 141 aa overlap (61-198:85-221)
40 50 60 70 80
pF1KE6 RRPSMFEKEAYTQILRERLRESIHNVQYVEPPFDDSIADIGKEWKSALAKLKF-ANSYRM
::. . .. : :: .. : :::
XP_011 LGLAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLP----LAPARWVAPSYRT
60 70 80 90 100 110
90 100 110 120 130 140
pF1KE6 EPL--KKFQAHSVETKVQQILTESLKDVKYDDKVFSHLSLELADRILLAVKEFGYHRYKF
::. ....: .. .. :. .:.:. :.. ..: :: ... . ..:.. :::.
XP_011 EPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKL
120 130 140 150 160 170
150 160 170 180 190
pF1KE6 IIKVLFIQKTGQAINIASRWIWDIAWDSWVAAKHEAESYVALVLVFALYYE
. .:.. ..::.....:: .::.: :. ..... : :.. : .:: :
XP_011 VCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGLYCE
180 190 200 210 220
>>NP_001013654 (OMIM: 611713) tctex1 domain-containing p (221 aa)
initn: 187 init1: 146 opt: 198 Z-score: 239.1 bits: 51.2 E(85289): 1.4e-06
Smith-Waterman score: 198; 27.0% identity (65.2% similar) in 141 aa overlap (61-198:85-221)
40 50 60 70 80
pF1KE6 RRPSMFEKEAYTQILRERLRESIHNVQYVEPPFDDSIADIGKEWKSALAKLKF-ANSYRM
::. . .. : :: .. : :::
NP_001 LGLAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLP----LAPARWVAPSYRT
60 70 80 90 100 110
90 100 110 120 130 140
pF1KE6 EPL--KKFQAHSVETKVQQILTESLKDVKYDDKVFSHLSLELADRILLAVKEFGYHRYKF
::. ....: .. .. :. .:.:. :.. ..: :: ... . ..:.. :::.
NP_001 EPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKL
120 130 140 150 160 170
150 160 170 180 190
pF1KE6 IIKVLFIQKTGQAINIASRWIWDIAWDSWVAAKHEAESYVALVLVFALYYE
. .:.. ..::.....:: .::.: :. ..... : :.. : .:: :
NP_001 VCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGLYCE
180 190 200 210 220
>>XP_016856676 (OMIM: 611713) PREDICTED: tctex1 domain-c (262 aa)
initn: 187 init1: 146 opt: 198 Z-score: 238.0 bits: 51.3 E(85289): 1.6e-06
Smith-Waterman score: 198; 27.0% identity (65.2% similar) in 141 aa overlap (61-198:126-262)
40 50 60 70 80
pF1KE6 RRPSMFEKEAYTQILRERLRESIHNVQYVEPPFDDSIADIGKEWKSALAKLKF-ANSYRM
::. . .. : :: .. : :::
XP_016 LGLAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLP----LAPARWVAPSYRT
100 110 120 130 140 150
90 100 110 120 130 140
pF1KE6 EPL--KKFQAHSVETKVQQILTESLKDVKYDDKVFSHLSLELADRILLAVKEFGYHRYKF
::. ....: .. .. :. .:.:. :.. ..: :: ... . ..:.. :::.
XP_016 EPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKL
160 170 180 190 200 210
150 160 170 180 190
pF1KE6 IIKVLFIQKTGQAINIASRWIWDIAWDSWVAAKHEAESYVALVLVFALYYE
. .:.. ..::.....:: .::.: :. ..... : :.. : .:: :
XP_016 VCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGLYCE
220 230 240 250 260
>>XP_006710677 (OMIM: 611713) PREDICTED: tctex1 domain-c (279 aa)
initn: 187 init1: 146 opt: 198 Z-score: 237.6 bits: 51.3 E(85289): 1.7e-06
Smith-Waterman score: 198; 27.0% identity (65.2% similar) in 141 aa overlap (61-198:143-279)
40 50 60 70 80
pF1KE6 RRPSMFEKEAYTQILRERLRESIHNVQYVEPPFDDSIADIGKEWKSALAKLKF-ANSYRM
::. . .. : :: .. : :::
XP_006 LGLAASFSRRNSLVGPGAGPGGQRPSLGPVPPLGSRVSFSGLP----LAPARWVAPSYRT
120 130 140 150 160
90 100 110 120 130 140
pF1KE6 EPL--KKFQAHSVETKVQQILTESLKDVKYDDKVFSHLSLELADRILLAVKEFGYHRYKF
::. ....: .. .. :. .:.:. :.. ..: :: ... . ..:.. :::.
XP_006 EPVPGERWEAARAQRALEAALAAGLHDACYSSDEAARLVRELCEQVHVRLRELSPPRYKL
170 180 190 200 210 220
150 160 170 180 190
pF1KE6 IIKVLFIQKTGQAINIASRWIWDIAWDSWVAAKHEAESYVALVLVFALYYE
. .:.. ..::.....:: .::.: :. ..... : :.. : .:: :
XP_006 VCSVVLGPRAGQGVHVVSRALWDVARDGLASVSYTNTSLFAVATVHGLYCE
230 240 250 260 270
198 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:09:05 2016 done: Tue Nov 8 14:09:06 2016
Total Scan time: 4.740 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]