FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6529, 213 aa
  1>>>pF1KE6529 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4872+/-0.000732; mu= 13.2148+/- 0.044
 mean_var=75.1854+/-14.986, 0's: 0 Z-trim(109.9): 12  B-trim: 73 in 1/49
 Lambda= 0.147913
 statistics sampled from 11243 (11249) to 11243 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.346), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS6458.1 INSL6 gene_id:11172|Hs108|chr9          ( 213) 1440 316.0 1.1e-86


>>CCDS6458.1 INSL6 gene_id:11172|Hs108|chr9               (213 aa)
 initn: 1440 init1: 1440 opt: 1440  Z-score: 1669.8  bits: 316.0 E(32554): 1.1e-86
Smith-Waterman score: 1440; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE6 MPRLLRLSLLWLGLLLVRFSRELSDISSARKLCGRYLVKEIEKLCGHANWSQFRFEEETP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MPRLLRLSLLWLGLLLVRFSRELSDISSARKLCGRYLVKEIEKLCGHANWSQFRFEEETP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 FSRLIAQASEKVEAYSPYQFESPQTASPARGRGTNPVSTSWEEAVNSWEMQSLPEYKDKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FSRLIAQASEKVEAYSPYQFESPQTASPARGRGTNPVSTSWEEAVNSWEMQSLPEYKDKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 GYSPLGKTREFSSSHNINVYIHENAKFQKKRRNKIKTLSNLFWGHHPQRKRRGYSEKCCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GYSPLGKTREFSSSHNINVYIHENAKFQKKRRNKIKTLSNLFWGHHPQRKRRGYSEKCCL
              130       140       150       160       170       180

              190       200       210   
pF1KE6 TGCTKEELSIACLPYIDFKRLKEKRSSLVTKIY
       :::::::::::::::::::::::::::::::::
CCDS64 TGCTKEELSIACLPYIDFKRLKEKRSSLVTKIY
              190       200       210   




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:08:24 2016 done: Tue Nov  8 14:08:24 2016
 Total Scan time:  2.260 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]