Result of FASTA (omim) for
pFN21AE6525
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6525, 95 aa
1>>>pF1KE6525 95 - 95 aa - 95 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0356+/-0.000286; mu= 10.3253+/- 0.018
mean_var=54.4725+/-11.050, 0's: 0 Z-trim(117.6): 9 B-trim: 0 in 0/51
Lambda= 0.173774
statistics sampled from 29789 (29798) to 29789 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.349), width: 16
Scan time: 3.220
The best scores are: opt bits E(85289)
NP_001002255 (OMIM: 600320,608829) small ubiquitin ( 95) 632 165.6 1.1e-41
NP_008868 (OMIM: 603042) small ubiquitin-related m ( 95) 533 140.8 3.2e-34
NP_008867 (OMIM: 602231) small ubiquitin-related m ( 103) 500 132.5 1.1e-31
NP_001005849 (OMIM: 603042) small ubiquitin-relate ( 71) 286 78.8 1.1e-15
NP_001273345 (OMIM: 602231) small ubiquitin-relate ( 141) 251 70.1 8.7e-13
NP_003343 (OMIM: 601912,613705) small ubiquitin-re ( 101) 248 69.3 1.1e-12
NP_001005781 (OMIM: 601912,613705) small ubiquitin ( 101) 248 69.3 1.1e-12
NP_001005782 (OMIM: 601912,613705) small ubiquitin ( 76) 214 60.8 3.1e-10
NP_116204 (OMIM: 614525) NFATC2-interacting protei ( 419) 168 49.5 4.2e-06
>>NP_001002255 (OMIM: 600320,608829) small ubiquitin-rel (95 aa)
initn: 632 init1: 632 opt: 632 Z-score: 869.4 bits: 165.6 E(85289): 1.1e-41
Smith-Waterman score: 632; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)
10 20 30 40 50 60
pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
10 20 30 40 50 60
70 80 90
pF1KE6 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
:::::::::::::::::::::::::::::::::::
NP_001 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
70 80 90
>>NP_008868 (OMIM: 603042) small ubiquitin-related modif (95 aa)
initn: 533 init1: 533 opt: 533 Z-score: 735.3 bits: 140.8 E(85289): 3.2e-34
Smith-Waterman score: 533; 85.3% identity (92.6% similar) in 95 aa overlap (1-95:1-95)
10 20 30 40 50 60
pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
::.::: : ::::::.::::::::::::::::::::.:::::::::::: .:::..::::
NP_008 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
10 20 30 40 50 60
70 80 90
pF1KE6 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
:: ::::. :: ::::::::::::::::: :::::
NP_008 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY
70 80 90
>>NP_008867 (OMIM: 602231) small ubiquitin-related modif (103 aa)
initn: 458 init1: 458 opt: 500 Z-score: 690.0 bits: 132.5 E(85289): 1.1e-31
Smith-Waterman score: 500; 83.0% identity (91.5% similar) in 94 aa overlap (1-94:1-93)
10 20 30 40 50 60
pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
:..::: : :::::. ::::::::::::::::::::.:::::::::::: .:::..::::
NP_008 MSEEKPKEGVKTEND-HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF
10 20 30 40 50
70 80 90
pF1KE6 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
:: ::::. :: ::::::::::::::::: ::::
NP_008 RFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVPESSLAGHSF
60 70 80 90 100
>>NP_001005849 (OMIM: 603042) small ubiquitin-related mo (71 aa)
initn: 403 init1: 286 opt: 286 Z-score: 402.6 bits: 78.8 E(85289): 1.1e-15
Smith-Waterman score: 357; 67.4% identity (70.5% similar) in 95 aa overlap (1-95:1-71)
10 20 30 40 50 60
pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
::.::: : ::::::.::::::::::::::::::::.::::::::::::
NP_001 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE-----------
10 20 30 40
70 80 90
pF1KE6 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
::::::::::::::: :::::
NP_001 -------------RQLEMEDEDTIDVFQQQTGGVY
50 60 70
>>NP_001273345 (OMIM: 602231) small ubiquitin-related mo (141 aa)
initn: 456 init1: 251 opt: 251 Z-score: 350.5 bits: 70.1 E(85289): 8.7e-13
Smith-Waterman score: 406; 59.8% identity (64.6% similar) in 127 aa overlap (6-94:6-131)
10 20 30 40
pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCE-----------
: : :::::. ::::::::::::::::::::.::::::::::::
NP_001 MSEEKPKEGVKTEND-HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQVRHLAPPQS
10 20 30 40 50
50 60 70 80
pF1KE6 ---------------------------PRGLSVKQIRFRFGGQPISGTDKPAQLEMEDED
:.:::..:::::: ::::. :: ::::::::::
NP_001 LPVCALVLCVPGIPRARASRGWTQMQLPEGLSMRQIRFRFDGQPINETDTPAQLEMEDED
60 70 80 90 100 110
90
pF1KE6 TIDVFQQPTGGVY
::::::: ::::
NP_001 TIDVFQQQTGGVPESSLAGHSF
120 130 140
>>NP_003343 (OMIM: 601912,613705) small ubiquitin-relate (101 aa)
initn: 253 init1: 244 opt: 248 Z-score: 348.7 bits: 69.3 E(85289): 1.1e-12
Smith-Waterman score: 248; 44.0% identity (76.9% similar) in 91 aa overlap (5-93:7-97)
10 20 30 40 50
pF1KE6 MANEKP-TEEV-KTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVK
:: ::.. .....:.::: :::.: ..::.: : :.:: ..::. .:. ..
NP_003 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
10 20 30 40 50 60
60 70 80 90
pF1KE6 QIRFRFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
..:: : :: :. . : .: ::.::.:.:.:. :::
NP_003 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
70 80 90 100
>>NP_001005781 (OMIM: 601912,613705) small ubiquitin-rel (101 aa)
initn: 253 init1: 244 opt: 248 Z-score: 348.7 bits: 69.3 E(85289): 1.1e-12
Smith-Waterman score: 248; 44.0% identity (76.9% similar) in 91 aa overlap (5-93:7-97)
10 20 30 40 50
pF1KE6 MANEKP-TEEV-KTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVK
:: ::.. .....:.::: :::.: ..::.: : :.:: ..::. .:. ..
NP_001 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN
10 20 30 40 50 60
60 70 80 90
pF1KE6 QIRFRFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
..:: : :: :. . : .: ::.::.:.:.:. :::
NP_001 SLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
70 80 90 100
>>NP_001005782 (OMIM: 601912,613705) small ubiquitin-rel (76 aa)
initn: 214 init1: 214 opt: 214 Z-score: 304.6 bits: 60.8 E(85289): 3.1e-10
Smith-Waterman score: 214; 43.1% identity (76.4% similar) in 72 aa overlap (22-93:1-72)
10 20 30 40 50 60
pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSVKQIRF
.. ::.: ..::.: : :.:: ..::. .:. ....::
NP_001 MSDQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF
10 20 30
70 80 90
pF1KE6 RFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
: :: :. . : .: ::.::.:.:.:. :::
NP_001 LFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
40 50 60 70
>>NP_116204 (OMIM: 614525) NFATC2-interacting protein [H (419 aa)
initn: 190 init1: 130 opt: 168 Z-score: 230.6 bits: 49.5 E(85289): 4.2e-06
Smith-Waterman score: 168; 36.4% identity (74.0% similar) in 77 aa overlap (12-87:342-418)
10 20 30 40
pF1KE6 MANEKPTEEVKTENNNHINLKVAGQDG-SVVQFKIKRQTPL
::......:.: :.. .... ...:..::
NP_116 ELSPTATPRTLKLGVADIIDCVVLTSSPEATETSQQLQLRVQGKEKHQTLEVSLSRDSPL
320 330 340 350 360 370
50 60 70 80 90
pF1KE6 SKLMKAYCEPRGLSVKQIRFRFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGVY
. ::. : : ::: ... : : : .:: . ::.: ::. : :.:.
NP_116 KTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG
380 390 400 410
95 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:06:02 2016 done: Tue Nov 8 14:06:03 2016
Total Scan time: 3.220 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]