FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6524, 130 aa
  1>>>pF1KE6524 130 - 130 aa - 130 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5696+/-0.000242; mu= 6.5796+/- 0.015
 mean_var=104.4971+/-20.929, 0's: 0 Z-trim(124.9): 4  B-trim: 1067 in 2/53
 Lambda= 0.125465
 statistics sampled from 47540 (47544) to 47540 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.854), E-opt: 0.2 (0.557), width:  16
 Scan time:  4.450

The best scores are:                                      opt bits E(85289)
NP_848592 (OMIM: 614829,614832) uncharacterized pr ( 130)  976 185.4 2.2e-47
NP_001244001 (OMIM: 614829,614832) uncharacterized (  85)  512 101.3   3e-22
NP_001193910 (OMIM: 614829,614832) uncharacterized ( 176)  185 42.3 0.00036
XP_011529970 (OMIM: 614829,614832) PREDICTED: unch ( 176)  185 42.3 0.00036


>>NP_848592 (OMIM: 614829,614832) uncharacterized protei  (130 aa)
 initn: 976 init1: 976 opt: 976  Z-score: 971.6  bits: 185.4 E(85289): 2.2e-47
Smith-Waterman score: 976; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KE6 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AQPITKTPRCPFHFFPRRPRIHFRFPNRPFVPSRCNHRFPFQPFYWPHRYLTYRYFPRRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 AQPITKTPRCPFHFFPRRPRIHFRFPNRPFVPSRCNHRFPFQPFYWPHRYLTYRYFPRRR
               70        80        90       100       110       120

              130
pF1KE6 LQRGSSSEES
       ::::::::::
NP_848 LQRGSSSEES
              130

>>NP_001244001 (OMIM: 614829,614832) uncharacterized pro  (85 aa)
 initn: 538 init1: 494 opt: 512  Z-score: 520.4  bits: 101.3 E(85289): 3e-22
Smith-Waterman score: 512; 93.6% identity (94.9% similar) in 78 aa overlap (1-78:1-74)

               10        20        30        40        50        60
pF1KE6 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AQPITKTPRCPFHFFPRRPRIHFRFPNRPFVPSRCNHRFPFQPFYWPHRYLTYRYFPRRR
       :::::::::    .::::                                          
NP_001 AQPITKTPR----YFPRRRLQRGSSSEES                               
                   70        80                                    

>>NP_001193910 (OMIM: 614829,614832) uncharacterized pro  (176 aa)
 initn: 176 init1: 164 opt: 185  Z-score: 195.9  bits: 42.3 E(85289): 0.00036
Smith-Waterman score: 185; 37.3% identity (55.9% similar) in 102 aa overlap (1-100:1-94)

               10        20        30        40        50        60
pF1KE6 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR
       ::::::::::::::::::::::.    .    ... :      . . :         . :
NP_001 MARRHCFSYWLLVCWLVVTVAEALSTFYL---QQHINLHMDKKRYLRLLEI----HKIMR
               10        20           30        40            50   

               70        80          90       100       110        
pF1KE6 AQPITKTPRCPFHFFPRRPRIHFRFPNR--PFVPSRCNHRFPFQPFYWPHRYLTYRYFPR
       . : ... . :.:. ::  : .   :..  : :::   :. :                  
NP_001 TLPTARSLHSPLHL-PRGVRSQGPSPSQRHPGVPSIFFHEGPESILGFQTDLSSLQGVTT
            60         70        80        90       100       110  

      120       130                                                
pF1KE6 RRLQRGSSSEES                                                
                                                                   
NP_001 VFHSSHFIGHTVTLLIGISPEEDSREEAHLRKAEREEKPKHTEAKKSLSFRKKQQKDFCF
            120       130       140       150       160       170  

>>XP_011529970 (OMIM: 614829,614832) PREDICTED: uncharac  (176 aa)
 initn: 176 init1: 164 opt: 185  Z-score: 195.9  bits: 42.3 E(85289): 0.00036
Smith-Waterman score: 185; 37.3% identity (55.9% similar) in 102 aa overlap (1-100:1-94)

               10        20        30        40        50        60
pF1KE6 MARRHCFSYWLLVCWLVVTVAEGQEEVFTPPGDSQNNADATDCQIFTLTPPPAPRSPVTR
       ::::::::::::::::::::::.    .    ... :      . . :         . :
XP_011 MARRHCFSYWLLVCWLVVTVAEALSTFYL---QQHINLHMDKKRYLRLLEI----HKIMR
               10        20           30        40            50   

               70        80          90       100       110        
pF1KE6 AQPITKTPRCPFHFFPRRPRIHFRFPNR--PFVPSRCNHRFPFQPFYWPHRYLTYRYFPR
       . : ... . :.:. ::  : .   :..  : :::   :. :                  
XP_011 TLPTARSLHSPLHL-PRGVRSQGPSPSQRHPGVPSIFFHEGPESILGFQTDLSSLQGVTT
            60         70        80        90       100       110  

      120       130                                                
pF1KE6 RRLQRGSSSEES                                                
                                                                   
XP_011 VFHSSHFIGHTVTLLIGISPEEDSREEAHLRKAEREEKPKHTEAKKSLSFRKKQQKDFCF
            120       130       140       150       160       170  




130 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:05:22 2016 done: Tue Nov  8 14:05:23 2016
 Total Scan time:  4.450 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]