Result of FASTA (ccds) for
pFN21AE6523
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6523, 94 aa
1>>>pF1KE6523 94 - 94 aa - 94 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0726+/-0.00056; mu= 5.5407+/- 0.034
mean_var=177.7003+/-34.403, 0's: 0 Z-trim(121.3): 24 B-trim: 51 in 1/54
Lambda= 0.096212
statistics sampled from 23243 (23269) to 23243 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.925), E-opt: 0.2 (0.715), width: 16
Scan time: 1.370
The best scores are: opt bits E(32554)
CCDS1015.1 LCE3C gene_id:353144|Hs108|chr1 ( 94) 760 114.7 8.6e-27
CCDS1014.1 LCE3D gene_id:84648|Hs108|chr1 ( 92) 620 95.2 6e-21
CCDS1013.1 LCE3E gene_id:353145|Hs108|chr1 ( 92) 606 93.3 2.3e-20
CCDS1016.1 LCE3B gene_id:353143|Hs108|chr1 ( 95) 568 88.0 9.1e-19
CCDS1017.1 LCE3A gene_id:353142|Hs108|chr1 ( 89) 546 85.0 7.2e-18
CCDS1022.1 LCE4A gene_id:199834|Hs108|chr1 ( 99) 458 72.8 3.7e-14
CCDS1028.1 LCE1A gene_id:353131|Hs108|chr1 ( 110) 405 65.5 6.5e-12
>>CCDS1015.1 LCE3C gene_id:353144|Hs108|chr1 (94 aa)
initn: 760 init1: 760 opt: 760 Z-score: 594.5 bits: 114.7 E(32554): 8.6e-27
Smith-Waterman score: 760; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94)
10 20 30 40 50 60
pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF
10 20 30 40 50 60
70 80 90
pF1KE6 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC
::::::::::::::::::::::::::::::::::
CCDS10 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC
70 80 90
>>CCDS1014.1 LCE3D gene_id:84648|Hs108|chr1 (92 aa)
initn: 469 init1: 407 opt: 620 Z-score: 489.6 bits: 95.2 E(32554): 6e-21
Smith-Waterman score: 620; 84.0% identity (89.4% similar) in 94 aa overlap (1-94:1-92)
10 20 30 40 50 60
pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF
::::::::::::::.:::::::::::.::::: :: :: ::::::::::.:: :.:::
CCDS10 MSCQQNQQQCQPPPKCPSPKCPPKSPVQCLPPASSGCAPSSGGCGPSSEGGCFLNHHR--
10 20 30 40 50
70 80 90
pF1KE6 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC
: :.::::: :::::::::::::: ::::::::
CCDS10 RHHRCRRQRPNSCDRGSGQQGGGSGCGHGSGGCC
60 70 80 90
>>CCDS1013.1 LCE3E gene_id:353145|Hs108|chr1 (92 aa)
initn: 440 init1: 398 opt: 606 Z-score: 479.1 bits: 93.3 E(32554): 2.3e-20
Smith-Waterman score: 606; 81.9% identity (89.4% similar) in 94 aa overlap (1-94:1-92)
10 20 30 40 50 60
pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF
:::::::.::::::.:::::::::.:.::::: :: :: ::::::::::.:: :.:::
CCDS10 MSCQQNQKQCQPPPKCPSPKCPPKNPVQCLPPASSGCAPSSGGCGPSSEGGCFLNHHR--
10 20 30 40 50
70 80 90
pF1KE6 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC
: :.:::::::::::::::::::: :::::::
CCDS10 RHHRCRRQRSNSCDRGSGQQGGGSGCCHGSGGCC
60 70 80 90
>>CCDS1016.1 LCE3B gene_id:353143|Hs108|chr1 (95 aa)
initn: 376 init1: 305 opt: 568 Z-score: 450.4 bits: 88.0 E(32554): 9.1e-19
Smith-Waterman score: 568; 78.9% identity (84.2% similar) in 95 aa overlap (1-94:1-95)
10 20 30 40 50
pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCG-PSSESGCCLSHHRH
:::::::::::: :.:::::::::: :::::: :: :: : :: ::::.::::::::
CCDS10 MSCQQNQQQCQPLPKCPSPKCPPKSSAQCLPPASSCCAPRPGCCGGPSSEGGCCLSHHRC
10 20 30 40 50 60
60 70 80 90
pF1KE6 FRSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC
:::.:::: ::::::::::: :.: :.::::::
CCDS10 CRSHRCRRQSSNSCDRGSGQQDGASDCGYGSGGCC
70 80 90
>>CCDS1017.1 LCE3A gene_id:353142|Hs108|chr1 (89 aa)
initn: 468 init1: 468 opt: 546 Z-score: 434.2 bits: 85.0 E(32554): 7.2e-18
Smith-Waterman score: 546; 77.7% identity (84.0% similar) in 94 aa overlap (1-94:1-89)
10 20 30 40 50 60
pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESGCCLSHHRHF
:::::::::::::: ::: ::::::::: ::.:: :::::::::: .:::::::
CCDS10 MSCQQNQQQCQPPP-----KCPAKSPAQCLPPASSSCAPSSGGCGPSSERSCCLSHHRCR
10 20 30 40 50
70 80 90
pF1KE6 RSHQCRRQRSNSCDRGSGQQGGGSCRGHGSGGCC
:::.:: : :::::::::::::.: ::.:.:::
CCDS10 RSHRCRCQSSNSCDRGSGQQGGSSSCGHSSAGCC
60 70 80
>>CCDS1022.1 LCE4A gene_id:199834|Hs108|chr1 (99 aa)
initn: 592 init1: 201 opt: 458 Z-score: 367.7 bits: 72.8 E(32554): 3.7e-14
Smith-Waterman score: 458; 66.0% identity (75.7% similar) in 103 aa overlap (1-94:1-99)
10 20 30 40 50
pF1KE6 MSCQQNQQQCQPPPSCPSPKCPPKSPAQCL---PPP-SSDCALSSGGCGP-SSESG-CCL
::::::::::::::.:: :: ::: :..: ::: :: :. :::::: :::.: :::
CCDS10 MSCQQNQQQCQPPPKCPIPKYPPKCPSKCASSCPPPISSCCGSSSGGCGCCSSEGGGCCL
10 20 30 40 50 60
60 70 80 90
pF1KE6 SHHRHFRSHQCRRQRSNSC-DRGSGQQGGGS--CRGHGSGGCC
::::: ::: :.: .:..: :::::.::: : : ::::
CCDS10 SHHRHHRSH-CHRPKSSNCYGSGSGQQSGGSGCCSG---GGCC
70 80 90
>>CCDS1028.1 LCE1A gene_id:353131|Hs108|chr1 (110 aa)
initn: 368 init1: 182 opt: 405 Z-score: 327.3 bits: 65.5 E(32554): 6.5e-12
Smith-Waterman score: 405; 53.5% identity (65.8% similar) in 114 aa overlap (1-94:1-110)
10 20 30 40 50
pF1KE6 MSCQQNQQQCQPPPSC--------PSPKCPPKSPAQCLPPPSSDCALSSGGCGPSSESG-
:::::.::::::::.: :.:::::: : .: :: :: :..::::: :: .:
CCDS10 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKC-PPVSSCCSVSSGGCCGSSSGGG
10 20 30 40 50
60 70 80 90
pF1KE6 -------CCLSHHRHFRSHQCRRQRSNSCDRGSGQQGGGSC----RGHGSGGCC
:::::::. :::. : : :. :.. :: :.:: :. :::::
CCDS10 CSSGGGGCCLSHHRRHRSHRHRLQSSGCCSQPSG---GSSCCGGDSGQHSGGCC
60 70 80 90 100 110
94 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:04:52 2016 done: Tue Nov 8 14:04:53 2016
Total Scan time: 1.370 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]