FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6521, 175 aa
  1>>>pF1KE6521 175 - 175 aa - 175 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3286+/-0.00033; mu= 13.4654+/- 0.021
 mean_var=75.8202+/-14.794, 0's: 0 Z-trim(115.6): 19  B-trim: 0 in 0/55
 Lambda= 0.147293
 statistics sampled from 26105 (26106) to 26105 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.306), width:  16
 Scan time:  3.210

The best scores are:                                      opt bits E(85289)
NP_054884 (OMIM: 252010,611776) NADH dehydrogenase ( 175) 1132 249.3 2.4e-66


>>NP_054884 (OMIM: 252010,611776) NADH dehydrogenase [ub  (175 aa)
 initn: 1132 init1: 1132 opt: 1132  Z-score: 1312.2  bits: 249.3 E(85289): 2.4e-66
Smith-Waterman score: 1132; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KE6 MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LLSFLKDVYVDSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 LLSFLKDVYVDSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEAL
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KE6 TLLNNHKLFPETWTAEKIMQEYQLEQKDVNSLLKYFVTFEVEIFPPEDKKAIRSK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 TLLNNHKLFPETWTAEKIMQEYQLEQKDVNSLLKYFVTFEVEIFPPEDKKAIRSK
              130       140       150       160       170     




175 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:03:53 2016 done: Tue Nov  8 14:03:53 2016
 Total Scan time:  3.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]