Result of FASTA (omim) for
pFN21AE6517
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6517, 212 aa
1>>>pF1KE6517 212 - 212 aa - 212 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5742+/-0.000393; mu= 11.6560+/- 0.024
mean_var=59.3376+/-11.607, 0's: 0 Z-trim(111.0): 15 B-trim: 0 in 0/52
Lambda= 0.166498
statistics sampled from 19460 (19472) to 19460 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.604), E-opt: 0.2 (0.228), width: 16
Scan time: 5.530
The best scores are: opt bits E(85289)
NP_057139 (OMIM: 611853) 39S ribosomal protein L48 ( 212) 1327 327.2 1.2e-89
NP_001305427 (OMIM: 611853) 39S ribosomal protein ( 194) 1113 275.8 3.3e-74
XP_016873408 (OMIM: 611853) PREDICTED: 39S ribosom ( 202) 1101 272.9 2.6e-73
NP_001305428 (OMIM: 611853) 39S ribosomal protein ( 253) 1101 272.9 3.2e-73
NP_001305429 (OMIM: 611853) 39S ribosomal protein ( 121) 423 110.0 1.7e-24
XP_016866485 (OMIM: 611976) PREDICTED: 28S ribosom ( 160) 128 39.2 0.0047
XP_005249263 (OMIM: 611976) PREDICTED: 28S ribosom ( 200) 128 39.2 0.0058
NP_060611 (OMIM: 611976) 28S ribosomal protein S10 ( 201) 128 39.2 0.0058
XP_011513027 (OMIM: 611976) PREDICTED: 28S ribosom ( 210) 128 39.2 0.006
XP_011513026 (OMIM: 611976) PREDICTED: 28S ribosom ( 211) 128 39.2 0.0061
>>NP_057139 (OMIM: 611853) 39S ribosomal protein L48, mi (212 aa)
initn: 1327 init1: 1327 opt: 1327 Z-score: 1730.3 bits: 327.2 E(85289): 1.2e-89
Smith-Waterman score: 1327; 99.5% identity (99.5% similar) in 212 aa overlap (1-212:1-212)
10 20 30 40 50 60
pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK
::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MSGTLEKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE
130 140 150 160 170 180
190 200 210
pF1KE6 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK
::::::::::::::::::::::::::::::::
NP_057 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK
190 200 210
>>NP_001305427 (OMIM: 611853) 39S ribosomal protein L48, (194 aa)
initn: 1110 init1: 1110 opt: 1113 Z-score: 1453.1 bits: 275.8 E(85289): 3.3e-74
Smith-Waterman score: 1113; 93.8% identity (94.8% similar) in 192 aa overlap (21-212:3-194)
10 20 30 40 50 60
pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK
.: : .:: : :::::::::::::::::::::::
NP_001 MGLSSCRKTSSGLPLILHYGGILLSISRPYKTKPTHGIGKYK
10 20 30 40
70 80 90 100 110 120
pF1KE6 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE6 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE
110 120 130 140 150 160
190 200 210
pF1KE6 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK
::::::::::::::::::::::::::::::::
NP_001 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK
170 180 190
>>XP_016873408 (OMIM: 611853) PREDICTED: 39S ribosomal p (202 aa)
initn: 1101 init1: 1101 opt: 1101 Z-score: 1437.3 bits: 272.9 E(85289): 2.6e-73
Smith-Waterman score: 1101; 100.0% identity (100.0% similar) in 175 aa overlap (38-212:28-202)
10 20 30 40 50 60
pF1KE6 VLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYKHLIKAEE
::::::::::::::::::::::::::::::
XP_016 MIIAPCSLELLGSSNPPASASGVAGITGGILLSISRPYKTKPTHGIGKYKHLIKAEE
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 PKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAM
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 PTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPEGVRLSVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPEGVRLSVK
120 130 140 150 160 170
190 200 210
pF1KE6 EHTEEDFKGRFKARPELEELLAKLK
:::::::::::::::::::::::::
XP_016 EHTEEDFKGRFKARPELEELLAKLK
180 190 200
>>NP_001305428 (OMIM: 611853) 39S ribosomal protein L48, (253 aa)
initn: 1313 init1: 1101 opt: 1101 Z-score: 1435.6 bits: 272.9 E(85289): 3.2e-73
Smith-Waterman score: 1192; 83.2% identity (83.2% similar) in 244 aa overlap (10-212:10-253)
10 20 30
pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSV-----------------------
::::::::::::::::::::::::::::
NP_001 MSGTLEKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVERRSCLWPRLEYSGMIIAPCSLE
10 20 30 40 50 60
40 50 60 70
pF1KE6 ------------------GGILLSISRPYKTKPTHGIGKYKHLIKAEEPKKKKGKVEVRA
::::::::::::::::::::::::::::::::::::::::::
NP_001 LLGSSNPPASASGVAGITGGILLSISRPYKTKPTHGIGKYKHLIKAEEPKKKKGKVEVRA
70 80 90 100 110 120
80 90 100 110 120 130
pF1KE6 INLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIEVLQLQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 INLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYAMPTKTIEVLQLQD
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE6 QGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPEGVRLSVKEHTEEDFKGRFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPEGVRLSVKEHTEEDFKGRFK
190 200 210 220 230 240
200 210
pF1KE6 ARPELEELLAKLK
:::::::::::::
NP_001 ARPELEELLAKLK
250
>>NP_001305429 (OMIM: 611853) 39S ribosomal protein L48, (121 aa)
initn: 423 init1: 423 opt: 423 Z-score: 560.8 bits: 110.0 E(85289): 1.7e-24
Smith-Waterman score: 562; 56.6% identity (56.6% similar) in 212 aa overlap (1-212:1-121)
10 20 30 40 50 60
pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK
::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGTLEKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK
:::::::
NP_001 HLIKAEE-----------------------------------------------------
130 140 150 160 170 180
pF1KE6 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE
::::::::::::::::::::::
NP_001 --------------------------------------ISGLSATFAEIFLEIIQSSLPE
70 80
190 200 210
pF1KE6 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK
::::::::::::::::::::::::::::::::
NP_001 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK
90 100 110 120
>>XP_016866485 (OMIM: 611976) PREDICTED: 28S ribosomal p (160 aa)
initn: 82 init1: 61 opt: 128 Z-score: 175.8 bits: 39.2 E(85289): 0.0047
Smith-Waterman score: 128; 29.5% identity (56.6% similar) in 129 aa overlap (85-207:29-151)
60 70 80 90 100 110
pF1KE6 GIGKYKHLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLC
: : :.. . ..: .. .:: .: :
XP_016 MKWVQFSNLHVDVPKDLTKPVVTISDEPDILYKRLSVLVKGHDKAVLDSY-EYFAVLA
10 20 30 40 50
120 130 140 150 160
pF1KE6 NS---LSIKVEESYAMPTKTIE---VLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAE
. .::::.: : . :: .:: .: .. . : : ... :... :.
XP_016 AKELGISIKVHE----PPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTAD
60 70 80 90 100 110
170 180 190 200 210
pF1KE6 IFLEIIQSSLPEGVRLSVKEHTEEDFKGRFKARPELEELLAKLK
..:: :: .::::: . : . :.. ..: .: : :
XP_016 VYLEYIQRNLPEGVAMEVTKTQLEQLPEHIK-EPIWETLSEEKEESKS
120 130 140 150 160
>>XP_005249263 (OMIM: 611976) PREDICTED: 28S ribosomal p (200 aa)
initn: 98 init1: 61 opt: 128 Z-score: 174.2 bits: 39.2 E(85289): 0.0058
Smith-Waterman score: 128; 29.5% identity (56.6% similar) in 129 aa overlap (85-207:69-191)
60 70 80 90 100 110
pF1KE6 GIGKYKHLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLC
: : :.. . ..: .. .:: .: :
XP_005 TNMKWVQFSNLHVDVPKDLTKPVVTISDEPDILYKRLSVLVKGHDKAVLDSY-EYFAVLA
40 50 60 70 80 90
120 130 140 150 160
pF1KE6 NS---LSIKVEESYAMPTKTIE---VLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAE
. .::::.: : . :: .:: .: .. . : : ... :... :.
XP_005 AKELGISIKVHE----PPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTAD
100 110 120 130 140 150
170 180 190 200 210
pF1KE6 IFLEIIQSSLPEGVRLSVKEHTEEDFKGRFKARPELEELLAKLK
..:: :: .::::: . : . :.. ..: .: : :
XP_005 VYLEYIQRNLPEGVAMEVTKTQLEQLPEHIK-EPIWETLSEEKEESKS
160 170 180 190 200
>>NP_060611 (OMIM: 611976) 28S ribosomal protein S10, mi (201 aa)
initn: 101 init1: 61 opt: 128 Z-score: 174.2 bits: 39.2 E(85289): 0.0058
Smith-Waterman score: 128; 29.5% identity (56.6% similar) in 129 aa overlap (85-207:70-192)
60 70 80 90 100 110
pF1KE6 GIGKYKHLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLC
: : :.. . ..: .. .:: .: :
NP_060 TNMKWVQFSNLHVDVPKDLTKPVVTISDEPDILYKRLSVLVKGHDKAVLDSY-EYFAVLA
40 50 60 70 80 90
120 130 140 150 160
pF1KE6 NS---LSIKVEESYAMPTKTIE---VLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAE
. .::::.: : . :: .:: .: .. . : : ... :... :.
NP_060 AKELGISIKVHE----PPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTAD
100 110 120 130 140 150
170 180 190 200 210
pF1KE6 IFLEIIQSSLPEGVRLSVKEHTEEDFKGRFKARPELEELLAKLK
..:: :: .::::: . : . :.. ..: .: : :
NP_060 VYLEYIQRNLPEGVAMEVTKTQLEQLPEHIK-EPIWETLSEEKEESKS
160 170 180 190 200
>>XP_011513027 (OMIM: 611976) PREDICTED: 28S ribosomal p (210 aa)
initn: 98 init1: 61 opt: 128 Z-score: 173.9 bits: 39.2 E(85289): 0.006
Smith-Waterman score: 128; 29.5% identity (56.6% similar) in 129 aa overlap (85-207:79-201)
60 70 80 90 100 110
pF1KE6 GIGKYKHLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLC
: : :.. . ..: .. .:: .: :
XP_011 TNMKWVQFSNLHVDVPKDLTKPVVTISDEPDILYKRLSVLVKGHDKAVLDSY-EYFAVLA
50 60 70 80 90 100
120 130 140 150 160
pF1KE6 NS---LSIKVEESYAMPTKTIE---VLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAE
. .::::.: : . :: .:: .: .. . : : ... :... :.
XP_011 AKELGISIKVHE----PPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTAD
110 120 130 140 150 160
170 180 190 200 210
pF1KE6 IFLEIIQSSLPEGVRLSVKEHTEEDFKGRFKARPELEELLAKLK
..:: :: .::::: . : . :.. ..: .: : :
XP_011 VYLEYIQRNLPEGVAMEVTKTQLEQLPEHIK-EPIWETLSEEKEESKS
170 180 190 200 210
>>XP_011513026 (OMIM: 611976) PREDICTED: 28S ribosomal p (211 aa)
initn: 101 init1: 61 opt: 128 Z-score: 173.8 bits: 39.2 E(85289): 0.0061
Smith-Waterman score: 128; 29.5% identity (56.6% similar) in 129 aa overlap (85-207:80-202)
60 70 80 90 100 110
pF1KE6 GIGKYKHLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLC
: : :.. . ..: .. .:: .: :
XP_011 TNMKWVQFSNLHVDVPKDLTKPVVTISDEPDILYKRLSVLVKGHDKAVLDSY-EYFAVLA
50 60 70 80 90 100
120 130 140 150 160
pF1KE6 NS---LSIKVEESYAMPTKTIE---VLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAE
. .::::.: : . :: .:: .: .. . : : ... :... :.
XP_011 AKELGISIKVHE----PPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTAD
110 120 130 140 150 160
170 180 190 200 210
pF1KE6 IFLEIIQSSLPEGVRLSVKEHTEEDFKGRFKARPELEELLAKLK
..:: :: .::::: . : . :.. ..: .: : :
XP_011 VYLEYIQRNLPEGVAMEVTKTQLEQLPEHIK-EPIWETLSEEKEESKS
170 180 190 200 210
212 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:01:38 2016 done: Tue Nov 8 14:01:39 2016
Total Scan time: 5.530 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]