FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6517, 212 aa
  1>>>pF1KE6517 212 - 212 aa - 212 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2720+/-0.000888; mu= 13.2449+/- 0.053
 mean_var=54.5986+/-10.814, 0's: 0 Z-trim(104.2): 21  B-trim: 301 in 1/50
 Lambda= 0.173574
 statistics sampled from 7794 (7798) to 7794 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.24), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS44676.1 MRPL48 gene_id:51642|Hs108|chr11       ( 212) 1327 340.3 5.5e-94
CCDS81594.1 MRPL48 gene_id:51642|Hs108|chr11       ( 121)  423 113.8 4.6e-26


>>CCDS44676.1 MRPL48 gene_id:51642|Hs108|chr11            (212 aa)
 initn: 1327 init1: 1327 opt: 1327  Z-score: 1800.9  bits: 340.3 E(32554): 5.5e-94
Smith-Waterman score: 1327; 99.5% identity (99.5% similar) in 212 aa overlap (1-212:1-212)

               10        20        30        40        50        60
pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSGTLEKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE
              130       140       150       160       170       180

              190       200       210  
pF1KE6 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK
       ::::::::::::::::::::::::::::::::
CCDS44 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK
              190       200       210  

>>CCDS81594.1 MRPL48 gene_id:51642|Hs108|chr11            (121 aa)
 initn: 423 init1: 423 opt: 423  Z-score: 581.5  bits: 113.8 E(32554): 4.6e-26
Smith-Waterman score: 562; 56.6% identity (56.6% similar) in 212 aa overlap (1-212:1-121)

               10        20        30        40        50        60
pF1KE6 MSGTLGKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSGTLEKVLCLRNNTIFKQAFSLLRFRTSGEKPIYSVGGILLSISRPYKTKPTHGIGKYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 HLIKAEEPKKKKGKVEVRAINLGTDYEYGVLNIHLTAYDMTLAESYAQYVHNLCNSLSIK
       :::::::                                                     
CCDS81 HLIKAEE-----------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KE6 VEESYAMPTKTIEVLQLQDQGSKMLLDSVLTTHERVVQISGLSATFAEIFLEIIQSSLPE
                                             ::::::::::::::::::::::
CCDS81 --------------------------------------ISGLSATFAEIFLEIIQSSLPE
                                              70        80         

              190       200       210  
pF1KE6 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK
       ::::::::::::::::::::::::::::::::
CCDS81 GVRLSVKEHTEEDFKGRFKARPELEELLAKLK
      90       100       110       120 




212 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:01:38 2016 done: Tue Nov  8 14:01:38 2016
 Total Scan time:  1.920 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]