FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6515, 153 aa
  1>>>pF1KE6515 153 - 153 aa - 153 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9384+/-0.000259; mu= 15.1641+/- 0.016
 mean_var=63.9518+/-12.432, 0's: 0 Z-trim(121.1): 2  B-trim: 347 in 2/54
 Lambda= 0.160379
 statistics sampled from 37211 (37213) to 37211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.436), width:  16
 Scan time:  4.140

The best scores are:                                      opt bits E(85289)
NP_004114 (OMIM: 137240) gastric inhibitory polype ( 153) 1001 238.9 2.4e-63
NP_002045 (OMIM: 138030) glucagon preproprotein [H ( 180)  143 40.4  0.0016


>>NP_004114 (OMIM: 137240) gastric inhibitory polypeptid  (153 aa)
 initn: 1001 init1: 1001 opt: 1001  Z-score: 1258.2  bits: 238.9 E(85289): 2.4e-63
Smith-Waterman score: 1001; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE6 MVATKTFALLLLSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MVATKTFALLLLSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFISD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YSIAMDKIHQQDFVNWLLAQKGKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YSIAMDKIHQQDFVNWLLAQKGKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPA
               70        80        90       100       110       120

              130       140       150   
pF1KE6 KNPSDEDLLRDLLIQELLACLLDQTNLCRLRSR
       :::::::::::::::::::::::::::::::::
NP_004 KNPSDEDLLRDLLIQELLACLLDQTNLCRLRSR
              130       140       150   

>>NP_002045 (OMIM: 138030) glucagon preproprotein [Homo   (180 aa)
 initn: 228 init1: 111 opt: 143  Z-score: 184.3  bits: 40.4 E(85289): 0.0016
Smith-Waterman score: 143; 29.5% identity (64.2% similar) in 95 aa overlap (22-114:27-117)

                    10        20        30        40        50     
pF1KE6      MVATKTFALLLLSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEG
                                 :.:   :::  . :...  ...  .    :...:
NP_002 MKSIYFVAGLFVMLVQGSWQRSLQDTEEKSRSFSASQADPLSDPDQMNEDK----RHSQG
               10        20        30        40        50          

          60        70        80          90       100       110   
pF1KE6 TFISDYSIAMDKIHQQDFVNWLLAQKGKKNDW--KHNITQREARALELASQANRKEEEAV
       :: ::::  .:. . ::::.::.  : ..:.   .:.  .:.:..   .. ..  : .:.
NP_002 TFTSDYSKYLDSRRAQDFVQWLMNTKRNRNNIAKRHDEFERHAEGTFTSDVSSYLEGQAA
         60        70        80        90       100       110      

           120       130       140       150                       
pF1KE6 EPQSSPAKNPSDEDLLRDLLIQELLACLLDQTNLCRLRSR                    
       .                                                           
NP_002 KEFIAWLVKGRGRRDFPEEVAIVEELGRRHADGSFSDEMNTILDNLAARDFINWLIQTKI
        120       130       140       150       160       170      




153 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:00:26 2016 done: Tue Nov  8 14:00:27 2016
 Total Scan time:  4.140 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]