Result of FASTA (ccds) for
pFN21AE6514
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6514, 147 aa
1>>>pF1KE6514 147 - 147 aa - 147 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1843+/-0.000732; mu= 11.9768+/- 0.044
mean_var=58.7418+/-11.717, 0's: 0 Z-trim(108.0): 13 B-trim: 14 in 1/51
Lambda= 0.167340
statistics sampled from 9894 (9905) to 9894 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.304), width: 16
Scan time: 1.280
The best scores are: opt bits E(32554)
CCDS7984.1 MS4A6E gene_id:245802|Hs108|chr11 ( 147) 928 231.8 1.1e-61
CCDS44616.1 MS4A6A gene_id:64231|Hs108|chr11 ( 178) 293 78.6 1.9e-15
CCDS44615.1 MS4A6A gene_id:64231|Hs108|chr11 ( 225) 293 78.6 2.3e-15
CCDS7981.1 MS4A6A gene_id:64231|Hs108|chr11 ( 248) 293 78.6 2.5e-15
CCDS58134.1 MS4A6A gene_id:64231|Hs108|chr11 ( 253) 293 78.7 2.6e-15
CCDS81568.1 MS4A6A gene_id:64231|Hs108|chr11 ( 276) 293 78.7 2.8e-15
>>CCDS7984.1 MS4A6E gene_id:245802|Hs108|chr11 (147 aa)
initn: 928 init1: 928 opt: 928 Z-score: 1220.7 bits: 231.8 E(32554): 1.1e-61
Smith-Waterman score: 928; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KE6 MTSQPISNETIIMLPSNVINFSQAEKPEPTNQGQDSLKKRLQAKVKVIGVHSSLAGSILS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MTSQPISNETIIMLPSNVINFSQAEKPEPTNQGQDSLKKRLQAKVKVIGVHSSLAGSILS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 ALSALVGFILLSVNPAALNPASLQCKLDEKDIPTRLLLSYDYHSPYTMDCHRAKASLAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ALSALVGFILLSVNPAALNPASLQCKLDEKDIPTRLLLSYDYHSPYTMDCHRAKASLAGT
70 80 90 100 110 120
130 140
pF1KE6 LSLMLVSTVLEFCLAVLTAVLQWKQTV
:::::::::::::::::::::::::::
CCDS79 LSLMLVSTVLEFCLAVLTAVLQWKQTV
130 140
>>CCDS44616.1 MS4A6A gene_id:64231|Hs108|chr11 (178 aa)
initn: 316 init1: 277 opt: 293 Z-score: 390.9 bits: 78.6 E(32554): 1.9e-15
Smith-Waterman score: 317; 45.2% identity (54.8% similar) in 168 aa overlap (1-103:1-168)
10 20 30 40
pF1KE6 MTSQPISNETIIMLPSNVINFSQAEKPEPTNQGQDSLKKRLQAKVKVIG-----------
:::::. :::::.::::::::::::::::::::::::::.:.:..::::
CCDS44 MTSQPVPNETIIVLPSNVINFSQAEKPEPTNQGQDSLKKHLHAEIKVIGTIQILCGMMVL
10 20 30 40 50 60
50
pF1KE6 -----------------------------------------------------VHSSLAG
:::::.:
CCDS44 SLGIILASASFSPNFTQVTSTLLNSAYPFIGPFFFIISGSLSIATEKRLTKLLVHSSLVG
70 80 90 100 110 120
60 70 80 90 100 110
pF1KE6 SILSALSALVGFILLSVNPAALNPASLQ-CKLDEKDIPTRLLLSYDYHSPYTMDCHRAKA
:::::::::::::.:::. :.::::::: .:.. :. . .: :
CCDS44 SILSALSALVGFIILSVKQATLNPASLQWNSLSDADLHSAGILPSCAHCCAAVETGLL
130 140 150 160 170
120 130 140
pF1KE6 SLAGTLSLMLVSTVLEFCLAVLTAVLQWKQTV
>>CCDS44615.1 MS4A6A gene_id:64231|Hs108|chr11 (225 aa)
initn: 512 init1: 277 opt: 293 Z-score: 389.3 bits: 78.6 E(32554): 2.3e-15
Smith-Waterman score: 427; 50.3% identity (59.2% similar) in 179 aa overlap (1-114:1-179)
10 20 30 40
pF1KE6 MTSQPISNETIIMLPSNVINFSQAEKPEPTNQGQDSLKKRLQAKVKVIG-----------
:::::. :::::.::::::::::::::::::::::::::.:.:..::::
CCDS44 MTSQPVPNETIIVLPSNVINFSQAEKPEPTNQGQDSLKKHLHAEIKVIGTIQILCGMMVL
10 20 30 40 50 60
50
pF1KE6 -----------------------------------------------------VHSSLAG
:::::.:
CCDS44 SLGIILASASFSPNFTQVTSTLLNSAYPFIGPFFFIISGSLSIATEKRLTKLLVHSSLVG
70 80 90 100 110 120
60 70 80 90 100 110
pF1KE6 SILSALSALVGFILLSVNPAALNPASLQCKLDEKDIPTRLLLSYDYH-SPYTMDCHRAKA
:::::::::::::.:::. :.::::::::.::...:::: .:: :: : :: ::. ::
CCDS44 SILSALSALVGFIILSVKQATLNPASLQCELDKNNIPTRSYVSYFYHDSLYTTDCYTAKA
130 140 150 160 170 180
120 130 140
pF1KE6 SLAGTLSLMLVSTVLEFCLAVLTAVLQWKQTV
CCDS44 SLAGTLSLMLICTLLEFCLAVLTAVLRWKQAYSDFPGVSVLAGFT
190 200 210 220
>>CCDS7981.1 MS4A6A gene_id:64231|Hs108|chr11 (248 aa)
initn: 512 init1: 277 opt: 293 Z-score: 388.6 bits: 78.6 E(32554): 2.5e-15
Smith-Waterman score: 427; 50.3% identity (59.2% similar) in 179 aa overlap (1-114:1-179)
10 20 30 40
pF1KE6 MTSQPISNETIIMLPSNVINFSQAEKPEPTNQGQDSLKKRLQAKVKVIG-----------
:::::. :::::.::::::::::::::::::::::::::.:.:..::::
CCDS79 MTSQPVPNETIIVLPSNVINFSQAEKPEPTNQGQDSLKKHLHAEIKVIGTIQILCGMMVL
10 20 30 40 50 60
50
pF1KE6 -----------------------------------------------------VHSSLAG
:::::.:
CCDS79 SLGIILASASFSPNFTQVTSTLLNSAYPFIGPFFFIISGSLSIATEKRLTKLLVHSSLVG
70 80 90 100 110 120
60 70 80 90 100 110
pF1KE6 SILSALSALVGFILLSVNPAALNPASLQCKLDEKDIPTRLLLSYDYH-SPYTMDCHRAKA
:::::::::::::.:::. :.::::::::.::...:::: .:: :: : :: ::. ::
CCDS79 SILSALSALVGFIILSVKQATLNPASLQCELDKNNIPTRSYVSYFYHDSLYTTDCYTAKA
130 140 150 160 170 180
120 130 140
pF1KE6 SLAGTLSLMLVSTVLEFCLAVLTAVLQWKQTV
CCDS79 SLAGTLSLMLICTLLEFCLAVLTAVLRWKQAYSDFPGSVLFLPHSYIGNSGMSSKMTHDC
190 200 210 220 230 240
>>CCDS58134.1 MS4A6A gene_id:64231|Hs108|chr11 (253 aa)
initn: 512 init1: 277 opt: 293 Z-score: 388.5 bits: 78.7 E(32554): 2.6e-15
Smith-Waterman score: 427; 50.3% identity (59.2% similar) in 179 aa overlap (1-114:29-207)
10 20 30
pF1KE6 MTSQPISNETIIMLPSNVINFSQAEKPEPTNQ
:::::. :::::.:::::::::::::::::::
CCDS58 MVLLKLLEVYRKGSAGTFHKSTIFGNTIMTSQPVPNETIIVLPSNVINFSQAEKPEPTNQ
10 20 30 40 50 60
40
pF1KE6 GQDSLKKRLQAKVKVIG-------------------------------------------
:::::::.:.:..::::
CCDS58 GQDSLKKHLHAEIKVIGTIQILCGMMVLSLGIILASASFSPNFTQVTSTLLNSAYPFIGP
70 80 90 100 110 120
50 60 70 80
pF1KE6 ---------------------VHSSLAGSILSALSALVGFILLSVNPAALNPASLQCKLD
:::::.::::::::::::::.:::. :.::::::::.::
CCDS58 FFFIISGSLSIATEKRLTKLLVHSSLVGSILSALSALVGFIILSVKQATLNPASLQCELD
130 140 150 160 170 180
90 100 110 120 130 140
pF1KE6 EKDIPTRLLLSYDYH-SPYTMDCHRAKASLAGTLSLMLVSTVLEFCLAVLTAVLQWKQTV
...:::: .:: :: : :: ::. ::
CCDS58 KNNIPTRSYVSYFYHDSLYTTDCYTAKASLAGTLSLMLICTLLEFCLAVLTAVLRWKQAY
190 200 210 220 230 240
>>CCDS81568.1 MS4A6A gene_id:64231|Hs108|chr11 (276 aa)
initn: 498 init1: 277 opt: 293 Z-score: 387.9 bits: 78.7 E(32554): 2.8e-15
Smith-Waterman score: 427; 50.3% identity (59.2% similar) in 179 aa overlap (1-114:29-207)
10 20 30
pF1KE6 MTSQPISNETIIMLPSNVINFSQAEKPEPTNQ
:::::. :::::.:::::::::::::::::::
CCDS81 MVLLKLLEVYRKGSAGTFHKSTIFGNTIMTSQPVPNETIIVLPSNVINFSQAEKPEPTNQ
10 20 30 40 50 60
40
pF1KE6 GQDSLKKRLQAKVKVIG-------------------------------------------
:::::::.:.:..::::
CCDS81 GQDSLKKHLHAEIKVIGTIQILCGMMVLSLGIILASASFSPNFTQVTSTLLNSAYPFIGP
70 80 90 100 110 120
50 60 70 80
pF1KE6 ---------------------VHSSLAGSILSALSALVGFILLSVNPAALNPASLQCKLD
:::::.::::::::::::::.:::. :.::::::::.::
CCDS81 FFFIISGSLSIATEKRLTKLLVHSSLVGSILSALSALVGFIILSVKQATLNPASLQCELD
130 140 150 160 170 180
90 100 110 120 130 140
pF1KE6 EKDIPTRLLLSYDYH-SPYTMDCHRAKASLAGTLSLMLVSTVLEFCLAVLTAVLQWKQTV
...:::: .:: :: : :: ::. ::
CCDS81 KNNIPTRSYVSYFYHDSLYTTDCYTAKASLAGTLSLMLICTLLEFCLAVLTAVLRWKQAY
190 200 210 220 230 240
147 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:59:52 2016 done: Tue Nov 8 13:59:53 2016
Total Scan time: 1.280 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]