FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6512, 163 aa
  1>>>pF1KE6512 163 - 163 aa - 163 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0433+/-0.000325; mu= 14.1771+/- 0.020
 mean_var=67.9787+/-13.258, 0's: 0 Z-trim(116.0): 4  B-trim: 29 in 1/53
 Lambda= 0.155556
 statistics sampled from 26800 (26803) to 26800 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.314), width:  16
 Scan time:  4.350

The best scores are:                                      opt bits E(85289)
NP_006180 (OMIM: 164340) olfactory marker protein  ( 163) 1083 251.3 5.1e-67


>>NP_006180 (OMIM: 164340) olfactory marker protein [Hom  (163 aa)
 initn: 1083 init1: 1083 opt: 1083  Z-score: 1324.2  bits: 251.3 E(85289): 5.1e-67
Smith-Waterman score: 1083; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE6 MAEDRPQQPQLDMPLVLDQGLTRQMRLRVESLKQRGEKRQDGEKLLQPAESVYRLNFTQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAEDRPQQPQLDMPLVLDQGLTRQMRLRVESLKQRGEKRQDGEKLLQPAESVYRLNFTQQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QRLQFERWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPTAIFWRKEDSDAIDWNEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QRLQFERWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPTAIFWRKEDSDAIDWNEA
               70        80        90       100       110       120

              130       140       150       160   
pF1KE6 DALEFGERLSDLAKIRKVMYFLVTFGEGVEPANLKASVVFNQL
       :::::::::::::::::::::::::::::::::::::::::::
NP_006 DALEFGERLSDLAKIRKVMYFLVTFGEGVEPANLKASVVFNQL
              130       140       150       160   




163 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:58:46 2016 done: Tue Nov  8 13:58:47 2016
 Total Scan time:  4.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]