FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6512, 163 aa
  1>>>pF1KE6512 163 - 163 aa - 163 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1102+/-0.000748; mu= 13.7206+/- 0.045
 mean_var=65.0824+/-12.867, 0's: 0 Z-trim(108.7): 8  B-trim: 5 in 1/51
 Lambda= 0.158980
 statistics sampled from 10405 (10409) to 10405 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.32), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS53682.1 OMP gene_id:4975|Hs108|chr11           ( 163) 1083 256.5 5.5e-69


>>CCDS53682.1 OMP gene_id:4975|Hs108|chr11                (163 aa)
 initn: 1083 init1: 1083 opt: 1083  Z-score: 1352.1  bits: 256.5 E(32554): 5.5e-69
Smith-Waterman score: 1083; 100.0% identity (100.0% similar) in 163 aa overlap (1-163:1-163)

               10        20        30        40        50        60
pF1KE6 MAEDRPQQPQLDMPLVLDQGLTRQMRLRVESLKQRGEKRQDGEKLLQPAESVYRLNFTQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAEDRPQQPQLDMPLVLDQGLTRQMRLRVESLKQRGEKRQDGEKLLQPAESVYRLNFTQQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QRLQFERWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPTAIFWRKEDSDAIDWNEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QRLQFERWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPTAIFWRKEDSDAIDWNEA
               70        80        90       100       110       120

              130       140       150       160   
pF1KE6 DALEFGERLSDLAKIRKVMYFLVTFGEGVEPANLKASVVFNQL
       :::::::::::::::::::::::::::::::::::::::::::
CCDS53 DALEFGERLSDLAKIRKVMYFLVTFGEGVEPANLKASVVFNQL
              130       140       150       160   




163 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:58:46 2016 done: Tue Nov  8 13:58:46 2016
 Total Scan time:  1.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]