FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6506, 104 aa
  1>>>pF1KE6506 104 - 104 aa - 104 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2781+/-0.000648; mu= 9.6011+/- 0.039
 mean_var=60.7821+/-12.171, 0's: 0 Z-trim(110.4): 21  B-trim: 389 in 1/48
 Lambda= 0.164508
 statistics sampled from 11556 (11576) to 11556 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.356), width:  16
 Scan time:  1.170

The best scores are:                                      opt bits E(32554)
CCDS1046.1 S100A14 gene_id:57402|Hs108|chr1        ( 104)  692 171.9 6.5e-44
CCDS30874.1 S100A13 gene_id:6284|Hs108|chr1        (  98)  237 63.9   2e-11


>>CCDS1046.1 S100A14 gene_id:57402|Hs108|chr1             (104 aa)
 initn: 692 init1: 692 opt: 692  Z-score: 901.9  bits: 171.9 E(32554): 6.5e-44
Smith-Waterman score: 692; 100.0% identity (100.0% similar) in 104 aa overlap (1-104:1-104)

               10        20        30        40        50        60
pF1KE6 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS
               10        20        30        40        50        60

               70        80        90       100    
pF1KE6 NCGLEEKIANLGSCNDSKLEFRSFWELIGEAAKSVKLERPVRGH
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NCGLEEKIANLGSCNDSKLEFRSFWELIGEAAKSVKLERPVRGH
               70        80        90       100    

>>CCDS30874.1 S100A13 gene_id:6284|Hs108|chr1             (98 aa)
 initn: 227 init1: 202 opt: 237  Z-score: 318.7  bits: 63.9 E(32554): 2e-11
Smith-Waterman score: 237; 38.0% identity (77.2% similar) in 92 aa overlap (12-102:3-94)

               10        20        30         40        50         
pF1KE6 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSV-EGGKETLTPSELRDLVTQQLPHLMP
                  :. ....:..:::.. .:  ..  :: :..:. .:...:::::::::. 
CCDS30          MAAEPLTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLK
                        10        20        30        40        50 

      60        70        80        90       100      
pF1KE6 SNCGLEEKIANLGSCNDSKLEFRSFWELIGEAAKSVKLERPVRGH  
       .  .:.::. .:   .::.:.:  .:.:::: :: .. .. ..    
CCDS30 DVGSLDEKMKSLDVNQDSELKFNEYWRLIGELAKEIRKKKDLKIRKK
              60        70        80        90        




104 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:57:21 2016 done: Tue Nov  8 03:57:21 2016
 Total Scan time:  1.170 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]