FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6504, 179 aa
  1>>>pF1KE6504 179 - 179 aa - 179 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4939+/-0.000343; mu= -1.7773+/- 0.022
 mean_var=400.5653+/-82.326, 0's: 0 Z-trim(126.8): 6  B-trim: 1006 in 1/61
 Lambda= 0.064082
 statistics sampled from 53482 (53497) to 53482 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.869), E-opt: 0.2 (0.627), width:  16
 Scan time:  4.280

The best scores are:                                      opt bits E(85289)
NP_619646 (OMIM: 234050,609188) M-phase-specific P ( 179) 1335 135.5 4.4e-32


>>NP_619646 (OMIM: 234050,609188) M-phase-specific PLK1-  (179 aa)
 initn: 1335 init1: 1335 opt: 1335  Z-score: 696.9  bits: 135.5 E(85289): 4.4e-32
Smith-Waterman score: 1335; 100.0% identity (100.0% similar) in 179 aa overlap (1-179:1-179)

               10        20        30        40        50        60
pF1KE6 MQRQNFRPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_619 MQRQNFRPPTPPYPGPGGGGWGSGSSFRGTPGGGGPRPPSPRDGYGSPHHTPPYGPRSRP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_619 YGSSHSPRHGGSFPGGRFGSPSPGGYPGSYSRSPAGSQQQFGYSPGQQQTHPQGSPRTST
               70        80        90       100       110       120

              130       140       150       160       170         
pF1KE6 PFGSGRVREKRMSNELENYFKPSMLEDPWAGLEPVSVVDISQQYSNTQTFTGKKGRYFC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_619 PFGSGRVREKRMSNELENYFKPSMLEDPWAGLEPVSVVDISQQYSNTQTFTGKKGRYFC
              130       140       150       160       170         




179 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:54:58 2016 done: Tue Nov  8 13:54:59 2016
 Total Scan time:  4.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]