Result of FASTA (omim) for
pFN21AE6503
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6503, 153 aa
1>>>pF1KE6503 153 - 153 aa - 153 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7627+/-0.000446; mu= 14.4325+/- 0.027
mean_var=53.8038+/-11.285, 0's: 0 Z-trim(109.4): 17 B-trim: 1033 in 2/46
Lambda= 0.174851
statistics sampled from 17583 (17600) to 17583 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.568), E-opt: 0.2 (0.206), width: 16
Scan time: 4.610
The best scores are: opt bits E(85289)
NP_001307730 (OMIM: 610075) ORM1-like protein 3 [H ( 153) 1011 263.0 1.4e-70
XP_016880836 (OMIM: 610075) PREDICTED: ORM1-like p ( 153) 1011 263.0 1.4e-70
NP_001307731 (OMIM: 610075) ORM1-like protein 3 [H ( 153) 1011 263.0 1.4e-70
XP_016880837 (OMIM: 610075) PREDICTED: ORM1-like p ( 153) 1011 263.0 1.4e-70
NP_644809 (OMIM: 610075) ORM1-like protein 3 [Homo ( 153) 1011 263.0 1.4e-70
XP_016880835 (OMIM: 610075) PREDICTED: ORM1-like p ( 153) 1011 263.0 1.4e-70
NP_001307732 (OMIM: 610075) ORM1-like protein 3 [H ( 153) 1011 263.0 1.4e-70
XP_016880834 (OMIM: 610075) PREDICTED: ORM1-like p ( 171) 1011 263.0 1.5e-70
NP_057551 (OMIM: 610073) ORM1-like protein 1 [Homo ( 153) 918 239.5 1.6e-63
NP_001121622 (OMIM: 610073) ORM1-like protein 1 [H ( 153) 918 239.5 1.6e-63
XP_016860836 (OMIM: 610073) PREDICTED: ORM1-like p ( 153) 918 239.5 1.6e-63
XP_005247027 (OMIM: 610073) PREDICTED: ORM1-like p ( 153) 918 239.5 1.6e-63
NP_054901 (OMIM: 610074) ORM1-like protein 2 [Homo ( 153) 891 232.7 1.8e-61
XP_011510502 (OMIM: 610073) PREDICTED: ORM1-like p ( 111) 663 175.1 2.8e-44
XP_011510501 (OMIM: 610073) PREDICTED: ORM1-like p ( 115) 661 174.6 4.1e-44
XP_016860837 (OMIM: 610073) PREDICTED: ORM1-like p ( 115) 661 174.6 4.1e-44
>>NP_001307730 (OMIM: 610075) ORM1-like protein 3 [Homo (153 aa)
initn: 1011 init1: 1011 opt: 1011 Z-score: 1388.3 bits: 263.0 E(85289): 1.4e-70
Smith-Waterman score: 1011; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
70 80 90 100 110 120
130 140 150
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
:::::::::::::::::::::::::::::::::
NP_001 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
130 140 150
>>XP_016880836 (OMIM: 610075) PREDICTED: ORM1-like prote (153 aa)
initn: 1011 init1: 1011 opt: 1011 Z-score: 1388.3 bits: 263.0 E(85289): 1.4e-70
Smith-Waterman score: 1011; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
70 80 90 100 110 120
130 140 150
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
:::::::::::::::::::::::::::::::::
XP_016 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
130 140 150
>>NP_001307731 (OMIM: 610075) ORM1-like protein 3 [Homo (153 aa)
initn: 1011 init1: 1011 opt: 1011 Z-score: 1388.3 bits: 263.0 E(85289): 1.4e-70
Smith-Waterman score: 1011; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
70 80 90 100 110 120
130 140 150
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
:::::::::::::::::::::::::::::::::
NP_001 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
130 140 150
>>XP_016880837 (OMIM: 610075) PREDICTED: ORM1-like prote (153 aa)
initn: 1011 init1: 1011 opt: 1011 Z-score: 1388.3 bits: 263.0 E(85289): 1.4e-70
Smith-Waterman score: 1011; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
70 80 90 100 110 120
130 140 150
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
:::::::::::::::::::::::::::::::::
XP_016 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
130 140 150
>>NP_644809 (OMIM: 610075) ORM1-like protein 3 [Homo sap (153 aa)
initn: 1011 init1: 1011 opt: 1011 Z-score: 1388.3 bits: 263.0 E(85289): 1.4e-70
Smith-Waterman score: 1011; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_644 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_644 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
70 80 90 100 110 120
130 140 150
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
:::::::::::::::::::::::::::::::::
NP_644 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
130 140 150
>>XP_016880835 (OMIM: 610075) PREDICTED: ORM1-like prote (153 aa)
initn: 1011 init1: 1011 opt: 1011 Z-score: 1388.3 bits: 263.0 E(85289): 1.4e-70
Smith-Waterman score: 1011; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
70 80 90 100 110 120
130 140 150
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
:::::::::::::::::::::::::::::::::
XP_016 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
130 140 150
>>NP_001307732 (OMIM: 610075) ORM1-like protein 3 [Homo (153 aa)
initn: 1011 init1: 1011 opt: 1011 Z-score: 1388.3 bits: 263.0 E(85289): 1.4e-70
Smith-Waterman score: 1011; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
70 80 90 100 110 120
130 140 150
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
:::::::::::::::::::::::::::::::::
NP_001 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
130 140 150
>>XP_016880834 (OMIM: 610075) PREDICTED: ORM1-like prote (171 aa)
initn: 1011 init1: 1011 opt: 1011 Z-score: 1387.5 bits: 263.0 E(85289): 1.5e-70
Smith-Waterman score: 1011; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:19-171)
10 20 30 40
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPF
::::::::::::::::::::::::::::::::::::::::::
XP_016 MFCAPLPEDRRTAERGSRMNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 VSVPVVWTLTNLIHNMGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSVPVVWTLTNLIHNMGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFL
70 80 90 100 110 120
110 120 130 140 150
pF1KE6 TITPIVLYFLTSFYTKYDQIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TITPIVLYFLTSFYTKYDQIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
130 140 150 160 170
>>NP_057551 (OMIM: 610073) ORM1-like protein 1 [Homo sap (153 aa)
initn: 918 init1: 918 opt: 918 Z-score: 1261.5 bits: 239.5 E(85289): 1.6e-63
Smith-Waterman score: 918; 84.3% identity (98.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
::::.::::::::::::::::.::.:.:..:::::::::::: ::::.:::::.:::.::
NP_057 MNVGVAHSEVNPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFFSVPVAWTLTNIIHNLGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
:.:::.::::::::::::::::::::::.:::::::.::::.::.::.::::.:::::::
NP_057 YVFLHAVKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFFTISPIILYFLASFYTKYD
70 80 90 100 110 120
130 140 150
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
::.:::.::.::::::.::::::::::::::
NP_057 PTHFILNTASLLSVLIPKMPQLHGVRIFGINKY
130 140 150
>>NP_001121622 (OMIM: 610073) ORM1-like protein 1 [Homo (153 aa)
initn: 918 init1: 918 opt: 918 Z-score: 1261.5 bits: 239.5 E(85289): 1.6e-63
Smith-Waterman score: 918; 84.3% identity (98.0% similar) in 153 aa overlap (1-153:1-153)
10 20 30 40 50 60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
::::.::::::::::::::::.::.:.:..:::::::::::: ::::.:::::.:::.::
NP_001 MNVGVAHSEVNPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFFSVPVAWTLTNIIHNLGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
:.:::.::::::::::::::::::::::.:::::::.::::.::.::.::::.:::::::
NP_001 YVFLHAVKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFFTISPIILYFLASFYTKYD
70 80 90 100 110 120
130 140 150
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
::.:::.::.::::::.::::::::::::::
NP_001 PTHFILNTASLLSVLIPKMPQLHGVRIFGINKY
130 140 150
153 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:54:26 2016 done: Tue Nov 8 13:54:26 2016
Total Scan time: 4.610 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]