FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6503, 153 aa
  1>>>pF1KE6503 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0402+/-0.000982; mu= 12.8806+/- 0.059
 mean_var=53.2104+/-11.022, 0's: 0 Z-trim(103.3): 13  B-trim: 68 in 1/47
 Lambda= 0.175823
 statistics sampled from 7340 (7343) to 7340 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.226), width:  16
 Scan time:  1.250

The best scores are:                                      opt bits E(32554)
CCDS11355.1 ORMDL3 gene_id:94103|Hs108|chr17       ( 153) 1011 264.2 2.2e-71
CCDS2301.1 ORMDL1 gene_id:94101|Hs108|chr2         ( 153)  918 240.7 2.7e-64
CCDS8893.1 ORMDL2 gene_id:29095|Hs108|chr12        ( 153)  891 233.8 3.2e-62


>>CCDS11355.1 ORMDL3 gene_id:94103|Hs108|chr17            (153 aa)
 initn: 1011 init1: 1011 opt: 1011  Z-score: 1395.2  bits: 264.2 E(32554): 2.2e-71
Smith-Waterman score: 1011; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
               70        80        90       100       110       120

              130       140       150   
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
       :::::::::::::::::::::::::::::::::
CCDS11 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
              130       140       150   

>>CCDS2301.1 ORMDL1 gene_id:94101|Hs108|chr2              (153 aa)
 initn: 918 init1: 918 opt: 918  Z-score: 1267.7  bits: 240.7 E(32554): 2.7e-64
Smith-Waterman score: 918; 84.3% identity (98.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
       ::::.::::::::::::::::.::.:.:..:::::::::::: ::::.:::::.:::.::
CCDS23 MNVGVAHSEVNPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFFSVPVAWTLTNIIHNLGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
       :.:::.::::::::::::::::::::::.:::::::.::::.::.::.::::.:::::::
CCDS23 YVFLHAVKGTPFETPDQGKARLLTHWEQLDYGVQFTSSRKFFTISPIILYFLASFYTKYD
               70        80        90       100       110       120

              130       140       150   
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
         ::.:::.::.::::::.::::::::::::::
CCDS23 PTHFILNTASLLSVLIPKMPQLHGVRIFGINKY
              130       140       150   

>>CCDS8893.1 ORMDL2 gene_id:29095|Hs108|chr12             (153 aa)
 initn: 891 init1: 891 opt: 891  Z-score: 1230.7  bits: 233.8 E(32554): 3.2e-62
Smith-Waterman score: 891; 81.0% identity (96.7% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KE6 MNVGTAHSEVNPNTRVMNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGM
       ::::.:::::::::::::::::::.:.. .::::.::::::: :.::::::::.:::.. 
CCDS88 MNVGVAHSEVNPNTRVMNSRGIWLAYIILVGLLHMVLLSIPFFSIPVVWTLTNVIHNLAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFTASRKFLTITPIVLYFLTSFYTKYD
       :.::::::::::::::::::::::::::::::.:::.:::::.:.:::::.:.:::::::
CCDS88 YVFLHTVKGTPFETPDQGKARLLTHWEQMDYGLQFTSSRKFLSISPIVLYLLASFYTKYD
               70        80        90       100       110       120

              130       140       150   
pF1KE6 QIHFVLNTVSLMSVLIPKLPQLHGVRIFGINKY
         ::..::.::.:::.:::::.::::.::::::
CCDS88 AAHFLINTASLLSVLLPKLPQFHGVRVFGINKY
              130       140       150   




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:54:25 2016 done: Tue Nov  8 13:54:25 2016
 Total Scan time:  1.250 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]