FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6502, 207 aa
  1>>>pF1KE6502 207 - 207 aa - 207 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2994+/-0.000301; mu= 14.2618+/- 0.019
 mean_var=70.0852+/-14.010, 0's: 0 Z-trim(117.4): 2  B-trim: 92 in 1/49
 Lambda= 0.153201
 statistics sampled from 29423 (29425) to 29423 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.345), width:  16
 Scan time:  3.540

The best scores are:                                      opt bits E(85289)
NP_808880 (OMIM: 268000,614477,614500) protein C8o ( 207) 1438 326.2 2.3e-89
XP_005250856 (OMIM: 268000,614477,614500) PREDICTE ( 288)  828 191.5 1.2e-48


>>NP_808880 (OMIM: 268000,614477,614500) protein C8orf37  (207 aa)
 initn: 1438 init1: 1438 opt: 1438  Z-score: 1725.2  bits: 326.2 E(85289): 2.3e-89
Smith-Waterman score: 1438; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KE6 MAEDLDELLDEVESKFCTPDLLRRGMVEQPKGCGGGTHSSDRNQAKAKETLRSTETFKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_808 MAEDLDELLDEVESKFCTPDLLRRGMVEQPKGCGGGTHSSDRNQAKAKETLRSTETFKKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DDLDSLINEILEEPNLDKKPSKLKSKSSGNTSVRASIEGLGKSCSPVYLGGSSIPCGIGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_808 DDLDSLINEILEEPNLDKKPSKLKSKSSGNTSVRASIEGLGKSCSPVYLGGSSIPCGIGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 NISWRACDHLRCIACDFLVVSYDDYMWDKSCDYLFFRNNMPEFHKLKAKLIKKKGTRAYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_808 NISWRACDHLRCIACDFLVVSYDDYMWDKSCDYLFFRNNMPEFHKLKAKLIKKKGTRAYA
              130       140       150       160       170       180

              190       200       
pF1KE6 CQCSWRTIEEVTDLQTDHQLRWVCGKH
       :::::::::::::::::::::::::::
NP_808 CQCSWRTIEEVTDLQTDHQLRWVCGKH
              190       200       

>>XP_005250856 (OMIM: 268000,614477,614500) PREDICTED: p  (288 aa)
 initn: 828 init1: 828 opt: 828  Z-score: 994.5  bits: 191.5 E(85289): 1.2e-48
Smith-Waterman score: 1114; 84.5% identity (84.5% similar) in 207 aa overlap (1-207:114-288)

                                             10        20        30
pF1KE6                               MAEDLDELLDEVESKFCTPDLLRRGMVEQP
                                     ::::::::::::::::::::::::::::::
XP_005 NGAGARQVPSLLLETTGALAIGGEKARRFKMAEDLDELLDEVESKFCTPDLLRRGMVEQP
            90       100       110       120       130       140   

               40        50        60        70        80        90
pF1KE6 KGCGGGTHSSDRNQAKAKETLRSTETFKKEDDLDSLINEILEEPNLDKKPSKLKSKSSGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGCGGGTHSSDRNQAKAKETLRSTETFKKEDDLDSLINEILEEPNLDKKPSKLKSKSSGN
           150       160       170       180       190       200   

              100       110       120       130       140       150
pF1KE6 TSVRASIEGLGKSCSPVYLGGSSIPCGIGTNISWRACDHLRCIACDFLVVSYDDYMWDKS
       :::::::::::::::::::::::::::::::::::                         
XP_005 TSVRASIEGLGKSCSPVYLGGSSIPCGIGTNISWR-------------------------
           210       220       230                                 

              160       170       180       190       200       
pF1KE6 CDYLFFRNNMPEFHKLKAKLIKKKGTRAYACQCSWRTIEEVTDLQTDHQLRWVCGKH
              ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 -------NNMPEFHKLKAKLIKKKGTRAYACQCSWRTIEEVTDLQTDHQLRWVCGKH
             240       250       260       270       280        




207 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:53:53 2016 done: Tue Nov  8 13:53:54 2016
 Total Scan time:  3.540 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]