Result of FASTA (omim) for
pFN21AE6488
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6488, 559 aa
1>>>pF1KE6488 559 - 559 aa - 559 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2548+/-0.00043; mu= 18.9069+/- 0.027
mean_var=68.4644+/-14.405, 0's: 0 Z-trim(110.4): 62 B-trim: 58 in 1/51
Lambda= 0.155004
statistics sampled from 18652 (18705) to 18652 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.564), E-opt: 0.2 (0.219), width: 16
Scan time: 8.460
The best scores are: opt bits E(85289)
NP_003618 (OMIM: 603733) large neutral amino acids ( 559) 3712 839.7 0
XP_016873940 (OMIM: 603733) PREDICTED: large neutr ( 559) 3712 839.7 0
NP_001185739 (OMIM: 603733) large neutral amino ac ( 559) 3712 839.7 0
XP_005274415 (OMIM: 603733) PREDICTED: large neutr ( 575) 3712 839.7 0
XP_016873941 (OMIM: 603733) PREDICTED: large neutr ( 528) 2503 569.3 1e-161
XP_011543622 (OMIM: 603733) PREDICTED: large neutr ( 544) 2503 569.3 1.1e-161
XP_016873942 (OMIM: 603733) PREDICTED: large neutr ( 303) 2003 457.4 3e-128
XP_011543624 (OMIM: 603733) PREDICTED: large neutr ( 303) 2003 457.4 3e-128
XP_011543623 (OMIM: 603733) PREDICTED: large neutr ( 303) 2003 457.4 3e-128
NP_001308293 (OMIM: 610791) large neutral amino ac ( 573) 1879 429.8 1.1e-119
NP_001271427 (OMIM: 610791) large neutral amino ac ( 573) 1879 429.8 1.1e-119
NP_001308294 (OMIM: 610791) large neutral amino ac ( 573) 1879 429.8 1.1e-119
NP_689559 (OMIM: 610791) large neutral amino acids ( 569) 1867 427.1 7.2e-119
XP_016879666 (OMIM: 610791) PREDICTED: large neutr ( 569) 1867 427.1 7.2e-119
XP_016879667 (OMIM: 610791) PREDICTED: large neutr ( 569) 1867 427.1 7.2e-119
XP_016879668 (OMIM: 610791) PREDICTED: large neutr ( 536) 1639 376.1 1.5e-103
NP_001271428 (OMIM: 610791) large neutral amino ac ( 432) 1328 306.5 1.1e-82
>>NP_003618 (OMIM: 603733) large neutral amino acids tra (559 aa)
initn: 3712 init1: 3712 opt: 3712 Z-score: 4485.0 bits: 839.7 E(85289): 0
Smith-Waterman score: 3712; 100.0% identity (100.0% similar) in 559 aa overlap (1-559:1-559)
10 20 30 40 50 60
pF1KE6 MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEGFYSSTCPAESSTNTTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEGFYSSTCPAESSTNTTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPRPVRLVGSACFTASCTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPRPVRLVGSACFTASCTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 MALASRDVEALSPLIFLALSLNGFGGICLTFTSLTLPNMFGNLRSTLMALMIGSYASSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MALASRDVEALSPLIFLALSLNGFGGICLTFTSLTLPNMFGNLRSTLMALMIGSYASSAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 TFPGIKLIYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPAPEEVNYTKKIKLSGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TFPGIKLIYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPAPEEVNYTKKIKLSGLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 LDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGTSENLPERSVPLRKSLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGTSENLPERSVPLRKSLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 SPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQKVAETVGFYSSVFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQKVAETVGFYSSVFG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 AMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSIRPRYCKIQKLTNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSIRPRYCKIQKLTNAI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 SAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSLYAAVFPSNHFGTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSLYAAVFPSNHFGTLT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 GLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLLPSYLFYYRARLQQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLLPSYLFYYRARLQQE
490 500 510 520 530 540
550
pF1KE6 YAANGMGPLKVLSGSEVTA
:::::::::::::::::::
NP_003 YAANGMGPLKVLSGSEVTA
550
>>XP_016873940 (OMIM: 603733) PREDICTED: large neutral a (559 aa)
initn: 3712 init1: 3712 opt: 3712 Z-score: 4485.0 bits: 839.7 E(85289): 0
Smith-Waterman score: 3712; 100.0% identity (100.0% similar) in 559 aa overlap (1-559:1-559)
10 20 30 40 50 60
pF1KE6 MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEGFYSSTCPAESSTNTTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEGFYSSTCPAESSTNTTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPRPVRLVGSACFTASCTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPRPVRLVGSACFTASCTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 MALASRDVEALSPLIFLALSLNGFGGICLTFTSLTLPNMFGNLRSTLMALMIGSYASSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MALASRDVEALSPLIFLALSLNGFGGICLTFTSLTLPNMFGNLRSTLMALMIGSYASSAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 TFPGIKLIYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPAPEEVNYTKKIKLSGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TFPGIKLIYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPAPEEVNYTKKIKLSGLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 LDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGTSENLPERSVPLRKSLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGTSENLPERSVPLRKSLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 SPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQKVAETVGFYSSVFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQKVAETVGFYSSVFG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 AMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSIRPRYCKIQKLTNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSIRPRYCKIQKLTNAI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 SAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSLYAAVFPSNHFGTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSLYAAVFPSNHFGTLT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 GLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLLPSYLFYYRARLQQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLLPSYLFYYRARLQQE
490 500 510 520 530 540
550
pF1KE6 YAANGMGPLKVLSGSEVTA
:::::::::::::::::::
XP_016 YAANGMGPLKVLSGSEVTA
550
>>NP_001185739 (OMIM: 603733) large neutral amino acids (559 aa)
initn: 3712 init1: 3712 opt: 3712 Z-score: 4485.0 bits: 839.7 E(85289): 0
Smith-Waterman score: 3712; 100.0% identity (100.0% similar) in 559 aa overlap (1-559:1-559)
10 20 30 40 50 60
pF1KE6 MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEGFYSSTCPAESSTNTTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEGFYSSTCPAESSTNTTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPRPVRLVGSACFTASCTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPRPVRLVGSACFTASCTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 MALASRDVEALSPLIFLALSLNGFGGICLTFTSLTLPNMFGNLRSTLMALMIGSYASSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALASRDVEALSPLIFLALSLNGFGGICLTFTSLTLPNMFGNLRSTLMALMIGSYASSAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 TFPGIKLIYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPAPEEVNYTKKIKLSGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFPGIKLIYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPAPEEVNYTKKIKLSGLA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 LDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGTSENLPERSVPLRKSLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGTSENLPERSVPLRKSLC
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 SPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQKVAETVGFYSSVFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQKVAETVGFYSSVFG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 AMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSIRPRYCKIQKLTNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSIRPRYCKIQKLTNAI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 SAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSLYAAVFPSNHFGTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSLYAAVFPSNHFGTLT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 GLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLLPSYLFYYRARLQQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLLPSYLFYYRARLQQE
490 500 510 520 530 540
550
pF1KE6 YAANGMGPLKVLSGSEVTA
:::::::::::::::::::
NP_001 YAANGMGPLKVLSGSEVTA
550
>>XP_005274415 (OMIM: 603733) PREDICTED: large neutral a (575 aa)
initn: 3712 init1: 3712 opt: 3712 Z-score: 4484.8 bits: 839.7 E(85289): 0
Smith-Waterman score: 3712; 100.0% identity (100.0% similar) in 559 aa overlap (1-559:17-575)
10 20 30 40
pF1KE6 MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEG
::::::::::::::::::::::::::::::::::::::::::::
XP_005 MRIPSPPGRSDWLGASMAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 FYSSTCPAESSTNTTQDEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FYSSTCPAESSTNTTQDEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 PVRLVGSACFTASCTLMALASRDVEALSPLIFLALSLNGFGGICLTFTSLTLPNMFGNLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PVRLVGSACFTASCTLMALASRDVEALSPLIFLALSLNGFGGICLTFTSLTLPNMFGNLR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 STLMALMIGSYASSAITFPGIKLIYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 STLMALMIGSYASSAITFPGIKLIYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE6 PEEVNYTKKIKLSGLALDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PEEVNYTKKIKLSGLALDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGT
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE6 SENLPERSVPLRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SENLPERSVPLRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQ
310 320 330 340 350 360
350 360 370 380 390 400
pF1KE6 QQKVAETVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QQKVAETVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATK
370 380 390 400 410 420
410 420 430 440 450 460
pF1KE6 SIRPRYCKIQKLTNAISAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SIRPRYCKIQKLTNAISAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACG
430 440 450 460 470 480
470 480 490 500 510 520
pF1KE6 SLYAAVFPSNHFGTLTGLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLYAAVFPSNHFGTLTGLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGF
490 500 510 520 530 540
530 540 550
pF1KE6 LLPSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA
:::::::::::::::::::::::::::::::::::
XP_005 LLPSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA
550 560 570
>>XP_016873941 (OMIM: 603733) PREDICTED: large neutral a (528 aa)
initn: 2503 init1: 2503 opt: 2503 Z-score: 3024.2 bits: 569.3 E(85289): 1e-161
Smith-Waterman score: 3444; 94.5% identity (94.5% similar) in 559 aa overlap (1-559:1-528)
10 20 30 40 50 60
pF1KE6 MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEGFYSSTCPAESSTNTTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEGFYSSTCPAESSTNTTQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 DEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPRPVRLVGSACFTASCTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPRPVRLVGSACFTASCTL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 MALASRDVEALSPLIFLALSLNGFGGICLTFTSLTLPNMFGNLRSTLMALMIGSYASSAI
::::::::::::::::::::::::::::::::::::
XP_016 MALASRDVEALSPLIFLALSLNGFGGICLTFTSLTL------------------------
130 140 150
190 200 210 220 230 240
pF1KE6 TFPGIKLIYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPAPEEVNYTKKIKLSGLA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -------IYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPAPEEVNYTKKIKLSGLA
160 170 180 190 200
250 260 270 280 290 300
pF1KE6 LDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGTSENLPERSVPLRKSLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGTSENLPERSVPLRKSLC
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE6 SPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQKVAETVGFYSSVFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQKVAETVGFYSSVFG
270 280 290 300 310 320
370 380 390 400 410 420
pF1KE6 AMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSIRPRYCKIQKLTNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSIRPRYCKIQKLTNAI
330 340 350 360 370 380
430 440 450 460 470 480
pF1KE6 SAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSLYAAVFPSNHFGTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSLYAAVFPSNHFGTLT
390 400 410 420 430 440
490 500 510 520 530 540
pF1KE6 GLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLLPSYLFYYRARLQQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLLPSYLFYYRARLQQE
450 460 470 480 490 500
550
pF1KE6 YAANGMGPLKVLSGSEVTA
:::::::::::::::::::
XP_016 YAANGMGPLKVLSGSEVTA
510 520
>>XP_011543622 (OMIM: 603733) PREDICTED: large neutral a (544 aa)
initn: 2503 init1: 2503 opt: 2503 Z-score: 3024.0 bits: 569.3 E(85289): 1.1e-161
Smith-Waterman score: 3444; 94.5% identity (94.5% similar) in 559 aa overlap (1-559:17-544)
10 20 30 40
pF1KE6 MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEG
::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRIPSPPGRSDWLGASMAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEG
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 FYSSTCPAESSTNTTQDEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FYSSTCPAESSTNTTQDEQRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 PVRLVGSACFTASCTLMALASRDVEALSPLIFLALSLNGFGGICLTFTSLTLPNMFGNLR
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVRLVGSACFTASCTLMALASRDVEALSPLIFLALSLNGFGGICLTFTSLTL--------
130 140 150 160 170
170 180 190 200 210 220
pF1KE6 STLMALMIGSYASSAITFPGIKLIYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPA
:::::::::::::::::::::::::::::::::::::
XP_011 -----------------------IYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPA
180 190 200
230 240 250 260 270 280
pF1KE6 PEEVNYTKKIKLSGLALDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEEVNYTKKIKLSGLALDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGT
210 220 230 240 250 260
290 300 310 320 330 340
pF1KE6 SENLPERSVPLRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SENLPERSVPLRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQ
270 280 290 300 310 320
350 360 370 380 390 400
pF1KE6 QQKVAETVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQKVAETVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATK
330 340 350 360 370 380
410 420 430 440 450 460
pF1KE6 SIRPRYCKIQKLTNAISAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIRPRYCKIQKLTNAISAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACG
390 400 410 420 430 440
470 480 490 500 510 520
pF1KE6 SLYAAVFPSNHFGTLTGLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLYAAVFPSNHFGTLTGLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGF
450 460 470 480 490 500
530 540 550
pF1KE6 LLPSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA
:::::::::::::::::::::::::::::::::::
XP_011 LLPSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA
510 520 530 540
>>XP_016873942 (OMIM: 603733) PREDICTED: large neutral a (303 aa)
initn: 2003 init1: 2003 opt: 2003 Z-score: 2423.4 bits: 457.4 E(85289): 3e-128
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 303 aa overlap (257-559:1-303)
230 240 250 260 270 280
pF1KE6 EVNYTKKIKLSGLALDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGTSE
::::::::::::::::::::::::::::::
XP_016 MGQRLSQKAPSLEDGSDAFMSPQDVRGTSE
10 20 30
290 300 310 320 330 340
pF1KE6 NLPERSVPLRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLPERSVPLRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQ
40 50 60 70 80 90
350 360 370 380 390 400
pF1KE6 KVAETVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVAETVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSI
100 110 120 130 140 150
410 420 430 440 450 460
pF1KE6 RPRYCKIQKLTNAISAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPRYCKIQKLTNAISAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSL
160 170 180 190 200 210
470 480 490 500 510 520
pF1KE6 YAAVFPSNHFGTLTGLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YAAVFPSNHFGTLTGLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLL
220 230 240 250 260 270
530 540 550
pF1KE6 PSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA
:::::::::::::::::::::::::::::::::
XP_016 PSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA
280 290 300
>>XP_011543624 (OMIM: 603733) PREDICTED: large neutral a (303 aa)
initn: 2003 init1: 2003 opt: 2003 Z-score: 2423.4 bits: 457.4 E(85289): 3e-128
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 303 aa overlap (257-559:1-303)
230 240 250 260 270 280
pF1KE6 EVNYTKKIKLSGLALDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGTSE
::::::::::::::::::::::::::::::
XP_011 MGQRLSQKAPSLEDGSDAFMSPQDVRGTSE
10 20 30
290 300 310 320 330 340
pF1KE6 NLPERSVPLRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLPERSVPLRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQ
40 50 60 70 80 90
350 360 370 380 390 400
pF1KE6 KVAETVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVAETVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSI
100 110 120 130 140 150
410 420 430 440 450 460
pF1KE6 RPRYCKIQKLTNAISAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPRYCKIQKLTNAISAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSL
160 170 180 190 200 210
470 480 490 500 510 520
pF1KE6 YAAVFPSNHFGTLTGLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YAAVFPSNHFGTLTGLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLL
220 230 240 250 260 270
530 540 550
pF1KE6 PSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA
:::::::::::::::::::::::::::::::::
XP_011 PSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA
280 290 300
>>XP_011543623 (OMIM: 603733) PREDICTED: large neutral a (303 aa)
initn: 2003 init1: 2003 opt: 2003 Z-score: 2423.4 bits: 457.4 E(85289): 3e-128
Smith-Waterman score: 2003; 100.0% identity (100.0% similar) in 303 aa overlap (257-559:1-303)
230 240 250 260 270 280
pF1KE6 EVNYTKKIKLSGLALDHKVTGDLFYTHVTTMGQRLSQKAPSLEDGSDAFMSPQDVRGTSE
::::::::::::::::::::::::::::::
XP_011 MGQRLSQKAPSLEDGSDAFMSPQDVRGTSE
10 20 30
290 300 310 320 330 340
pF1KE6 NLPERSVPLRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLPERSVPLRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQEHETNEQQQ
40 50 60 70 80 90
350 360 370 380 390 400
pF1KE6 KVAETVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVAETVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDARDGVATKSI
100 110 120 130 140 150
410 420 430 440 450 460
pF1KE6 RPRYCKIQKLTNAISAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RPRYCKIQKLTNAISAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGFFHSACGSL
160 170 180 190 200 210
470 480 490 500 510 520
pF1KE6 YAAVFPSNHFGTLTGLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YAAVFPSNHFGTLTGLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLLFSLLGFLL
220 230 240 250 260 270
530 540 550
pF1KE6 PSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA
:::::::::::::::::::::::::::::::::
XP_011 PSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA
280 290 300
>>NP_001308293 (OMIM: 610791) large neutral amino acids (573 aa)
initn: 1960 init1: 1067 opt: 1879 Z-score: 2269.5 bits: 429.8 E(85289): 1.1e-119
Smith-Waterman score: 2143; 59.4% identity (81.1% similar) in 562 aa overlap (1-540:1-549)
10 20 30 40 50
pF1KE6 MAPTLQQAYRRRWWMACTAVLENLFFSAVLLGWGSLLIILKNEGFYSSTCPA-ESSTNTT
::::: :.:::::::::::::::.:::::::::::::.::.::::: : :. :: :
NP_001 MAPTLATAHRRRWWMACTAVLENLLFSAVLLGWGSLLIMLKSEGFYSYLCTEPENVTNGT
10 20 30 40 50 60
60 70 80 90 100
pF1KE6 --------QDE---QRRWPGCDQQDEMLNLGFTIGSFVLSATTLPLGILMDRFGPRPVRL
..: . : .:. :::::::.::.:::.::: ::::::.::..::: .::
NP_001 VGGTAEPGHEEVSWMNGWLSCQAQDEMLNLAFTVGSFLLSAITLPLGIVMDKYGPRKLRL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 VGSACFTASCTLMALASRDVEALSPLIFLALSLNGFGGICLTFTSLTLPNMFGNLRSTLM
.:::::..:: :.: .. .::: :::.::.::::::.:.::::::::::::.::::..
NP_001 LGSACFAVSCLLIAYGASKPNALSVLIFIALALNGFGGMCMTFTSLTLPNMFGDLRSTFI
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 ALMIGSYASSAITFPGIKLIYDAGVAFVVIMFTWSGLACLIFLNCTLNWPIEAFPAPEEV
:::::::::::.:::::::::::::.:.:.. .:.: . :.:::: .:::.: ::.::..
NP_001 ALMIGSYASSAVTFPGIKLIYDAGVSFIVVLVVWAGCSGLVFLNCFFNWPLEPFPGPEDM
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE6 NYTKKIKLSGLALDHKVTGDLFYTHVTTMGQRLS--------QKAPSLEDGSDAFMSPQD
.:. :::.: :..:::.:: :: .:::.:.::: .. .:..: .: :
NP_001 DYSVKIKFSWLGFDHKITGKQFYKQVTTVGRRLSVGSSMRSAKEQVALQEGHKLCLSTVD
250 260 270 280 290 300
290 300 310 320 330
pF1KE6 VRGTSENLPERSV-P-LRKSLCSPTFLWSLLTMGMTQLRIIFYMAAVNKMLEYLVTGGQE
.. . :. .: : . .:. :: .: ::.:: .::::.::::.:.:..:..::.:
NP_001 LEVKCQ--PDAAVAPSFMHSVFSPILLLSLVTMCVTQLRLIFYMGAMNNILKFLVSG---
310 320 330 340 350
340 350 360 370 380 390
pF1KE6 HETNEQQQKVAETVGFYSSVFGAMQLLCLLTCPLIGYIMDWRIKDCVDAPTQGTVLGDAR
.:. : :::.:.:.::..::::::: :.::::::::.:.: :: .. ::
NP_001 -----DQKTVMATVGLYTSIFGVLQLLCLLTAPVIGYIMDWRLKECEDA-SEEPEEKDAN
360 370 380 390 400
400 410 420 430 440 450
pF1KE6 DGVATKSIRPRYCKIQKLTNAISAFTLTNLLLVGFGITCLINNLHLQFVTFVLHTIVRGF
.: :. : : .:::.:::. ::..:::::::::.:::: :: ::...:.::::::::
NP_001 QGEKKKKKRDR--QIQKITNAMRAFAFTNLLLVGFGVTCLIPNLPLQILSFILHTIVRGF
410 420 430 440 450 460
460 470 480 490 500 510
pF1KE6 FHSACGSLYAAVFPSNHFGTLTGLQSLISAVFALLQQPLFMAMVGPLKGEPFWVNLGLLL
.::: :.:::::.::..::.::::::::::.:::::::::.::.:::.:.:.:::.::::
NP_001 IHSAVGGLYAAVYPSTQFGSLTGLQSLISALFALLQQPLFLAMMGPLQGDPLWVNVGLLL
470 480 490 500 510 520
520 530 540 550
pF1KE6 FSLLGFLLPSYLFYYRARLQQEYAANGMGPLKVLSGSEVTA
.::::: :: ::. :: .:...
NP_001 LSLLGFCLPLYLICYRRQLERQLQQRQEDDKLFLKINGSSNQEAFV
530 540 550 560 570
559 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:47:50 2016 done: Tue Nov 8 13:47:51 2016
Total Scan time: 8.460 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]