Result of FASTA (omim) for
pFN21AE6473
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6473, 453 aa
1>>>pF1KE6473 453 - 453 aa - 453 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0514+/-0.000357; mu= 14.9390+/- 0.022
mean_var=101.8501+/-20.034, 0's: 0 Z-trim(116.5): 23 B-trim: 217 in 1/51
Lambda= 0.127085
statistics sampled from 27694 (27717) to 27694 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.325), width: 16
Scan time: 9.050
The best scores are: opt bits E(85289)
NP_689485 (OMIM: 611130) charged multivesicular bo ( 453) 2941 549.8 5.5e-156
XP_016869450 (OMIM: 611130) PREDICTED: charged mul ( 495) 2823 528.2 1.9e-149
XP_006716478 (OMIM: 611130) PREDICTED: charged mul ( 429) 2294 431.2 2.7e-120
XP_016869453 (OMIM: 611130) PREDICTED: charged mul ( 343) 2189 411.8 1.4e-114
NP_001304828 (OMIM: 611130) charged multivesicular ( 343) 2189 411.8 1.4e-114
XP_016869451 (OMIM: 611130) PREDICTED: charged mul ( 385) 2071 390.2 5e-108
XP_016869452 (OMIM: 611130) PREDICTED: charged mul ( 385) 2071 390.2 5e-108
XP_016869454 (OMIM: 611130) PREDICTED: charged mul ( 319) 1542 293.2 6.9e-79
NP_078867 (OMIM: 610901) charged multivesicular bo ( 201) 246 55.4 1.6e-07
XP_005257725 (OMIM: 610901) PREDICTED: charged mul ( 245) 233 53.1 9.9e-07
NP_689497 (OMIM: 610899) charged multivesicular bo ( 233) 218 50.3 6.4e-06
NP_789782 (OMIM: 605387,610897) charged multivesic ( 224) 208 48.5 2.2e-05
NP_054888 (OMIM: 610051) charged multivesicular bo ( 265) 203 47.6 4.7e-05
NP_057494 (OMIM: 610900) charged multivesicular bo ( 219) 168 41.1 0.0035
>>NP_689485 (OMIM: 611130) charged multivesicular body p (453 aa)
initn: 2941 init1: 2941 opt: 2941 Z-score: 2921.5 bits: 549.8 E(85289): 5.5e-156
Smith-Waterman score: 2941; 100.0% identity (100.0% similar) in 453 aa overlap (1-453:1-453)
10 20 30 40 50 60
pF1KE6 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
370 380 390 400 410 420
430 440 450
pF1KE6 LEAELEKLSLSEGGLVPSSKSPKRQLEPTLKPL
:::::::::::::::::::::::::::::::::
NP_689 LEAELEKLSLSEGGLVPSSKSPKRQLEPTLKPL
430 440 450
>>XP_016869450 (OMIM: 611130) PREDICTED: charged multive (495 aa)
initn: 2823 init1: 2823 opt: 2823 Z-score: 2804.0 bits: 528.2 E(85289): 1.9e-149
Smith-Waterman score: 2823; 98.9% identity (99.3% similar) in 441 aa overlap (1-441:1-441)
10 20 30 40 50 60
pF1KE6 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
370 380 390 400 410 420
430 440 450
pF1KE6 LEAELEKLSLSEGGLVPSSKSPKRQLEPTLKPL
::::::::::::::. ::.
XP_016 LEAELEKLSLSEGGMELFSKAFGGHMAFWLTELMGPSPITPFARVPEPCRELRVVYIKTQ
430 440 450 460 470 480
>>XP_006716478 (OMIM: 611130) PREDICTED: charged multive (429 aa)
initn: 2294 init1: 2294 opt: 2294 Z-score: 2280.7 bits: 431.2 E(85289): 2.7e-120
Smith-Waterman score: 2294; 98.3% identity (99.4% similar) in 359 aa overlap (1-359:1-359)
10 20 30 40 50 60
pF1KE6 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MWSPEREAEAPAGGDPAGLLPPEWEEDEERMSFLFSAFKRSREVNSTDWDSKMGFWAPLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LSHSRRQGVVRLRLRDLQEAFQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WGVGVFLLKPLKWTLSNMLGDNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SELSTLCANSCPDERTFYLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VYQLMQSEQLLSRKVESLSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDE
:::::::::::::::::::::::::::::::::::::::::::::::::::::. ...
XP_006 KLDTVQGILDRIYASQTDQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQEILTVKNW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 VSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE
XP_006 RRNWTSSFRIPPKNLWICLTTPAIGILPTACLTLGSQMLNLKLNLRNCPYQREVWSQAVN
370 380 390 400 410 420
>>XP_016869453 (OMIM: 611130) PREDICTED: charged multive (343 aa)
initn: 2189 init1: 2189 opt: 2189 Z-score: 2178.0 bits: 411.8 E(85289): 1.4e-114
Smith-Waterman score: 2189; 100.0% identity (100.0% similar) in 343 aa overlap (111-453:1-343)
90 100 110 120 130 140
pF1KE6 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG
::::::::::::::::::::::::::::::
XP_016 MASVDSSWISWGVGVFLLKPLKWTLSNMLG
10 20 30
150 160 170 180 190 200
pF1KE6 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE6 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE6 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE6 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE6 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
280 290 300 310 320 330
450
pF1KE6 SPKRQLEPTLKPL
:::::::::::::
XP_016 SPKRQLEPTLKPL
340
>>NP_001304828 (OMIM: 611130) charged multivesicular bod (343 aa)
initn: 2189 init1: 2189 opt: 2189 Z-score: 2178.0 bits: 411.8 E(85289): 1.4e-114
Smith-Waterman score: 2189; 100.0% identity (100.0% similar) in 343 aa overlap (111-453:1-343)
90 100 110 120 130 140
pF1KE6 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG
::::::::::::::::::::::::::::::
NP_001 MASVDSSWISWGVGVFLLKPLKWTLSNMLG
10 20 30
150 160 170 180 190 200
pF1KE6 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE6 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE6 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE6 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE6 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
280 290 300 310 320 330
450
pF1KE6 SPKRQLEPTLKPL
:::::::::::::
NP_001 SPKRQLEPTLKPL
340
>>XP_016869451 (OMIM: 611130) PREDICTED: charged multive (385 aa)
initn: 2071 init1: 2071 opt: 2071 Z-score: 2060.4 bits: 390.2 E(85289): 5e-108
Smith-Waterman score: 2071; 98.5% identity (99.1% similar) in 331 aa overlap (111-441:1-331)
90 100 110 120 130 140
pF1KE6 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG
::::::::::::::::::::::::::::::
XP_016 MASVDSSWISWGVGVFLLKPLKWTLSNMLG
10 20 30
150 160 170 180 190 200
pF1KE6 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE6 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE6 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE6 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE6 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::. ::
XP_016 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGMELFSK
280 290 300 310 320 330
450
pF1KE6 SPKRQLEPTLKPL
.
XP_016 AFGGHMAFWLTELMGPSPITPFARVPEPCRELRVVYIKTQSLNHWNAFIFKIFLL
340 350 360 370 380
>>XP_016869452 (OMIM: 611130) PREDICTED: charged multive (385 aa)
initn: 2071 init1: 2071 opt: 2071 Z-score: 2060.4 bits: 390.2 E(85289): 5e-108
Smith-Waterman score: 2071; 98.5% identity (99.1% similar) in 331 aa overlap (111-441:1-331)
90 100 110 120 130 140
pF1KE6 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG
::::::::::::::::::::::::::::::
XP_016 MASVDSSWISWGVGVFLLKPLKWTLSNMLG
10 20 30
150 160 170 180 190 200
pF1KE6 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE6 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE6 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE6 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE6 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::. ::
XP_016 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGMELFSK
280 290 300 310 320 330
450
pF1KE6 SPKRQLEPTLKPL
.
XP_016 AFGGHMAFWLTELMGPSPITPFARVPEPCRELRVVYIKTQSLNHWNAFIFKIFLL
340 350 360 370 380
>>XP_016869454 (OMIM: 611130) PREDICTED: charged multive (319 aa)
initn: 1542 init1: 1542 opt: 1542 Z-score: 1537.3 bits: 293.2 E(85289): 6.9e-79
Smith-Waterman score: 1542; 97.6% identity (99.2% similar) in 249 aa overlap (111-359:1-249)
90 100 110 120 130 140
pF1KE6 FQRKGSVPLGLATVLQDLLRRGELQRESDFMASVDSSWISWGVGVFLLKPLKWTLSNMLG
::::::::::::::::::::::::::::::
XP_016 MASVDSSWISWGVGVFLLKPLKWTLSNMLG
10 20 30
150 160 170 180 190 200
pF1KE6 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNKVPAEEVLVAVELLKEKAEEVYRLYQNSPLSSHPVVALSELSTLCANSCPDERTFYLV
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE6 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVESLSQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE6 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQTDQM
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE6 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDSEEL
:::::::::::::::::::::::::::::::::. ...
XP_016 VFNAYQAGVGALKLSMKDVTVEKAESLVDQIQEILTVKNWRRNWTSSFRIPPKNLWICLT
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE6 EKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAELEAELEKLSLSEGGLVPSSK
XP_016 TPAIGILPTACLTLGSQMLNLKLNLRNCPYQREVWSQAVNLQKGNWNRL
280 290 300 310
>>NP_078867 (OMIM: 610901) charged multivesicular body p (201 aa)
initn: 144 init1: 95 opt: 246 Z-score: 255.9 bits: 55.4 E(85289): 1.6e-07
Smith-Waterman score: 246; 26.4% identity (62.9% similar) in 197 aa overlap (228-423:7-199)
200 210 220 230 240 250
pF1KE6 YLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVES
: : : :.. : .. :: :... : . .
NP_078 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKR
10 20 30
260 270 280 290 300 310
pF1KE6 LSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQT
..:. :: . ::. : :.:. : :: :. :. .. . .......... : .:
NP_078 IAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQI
40 50 60 70 80 90
320 330 340 350 360 370
pF1KE6 DQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDS
.. :... : : :. . ...:..: ..:. :: . : .... :::. :. :
NP_078 EMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFTQ---EDE
100 110 120 130 140 150
380 390 400 410 420 430
pF1KE6 EELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVP-NPRISDAELEAELEKLSLSEGGLV
. . .::. . :. . : ..:..: ... ..:: . : .::: :
NP_078 DAILEELSAITQEQIELP-EVPSEPLPEKIPENVPVKARPRQAELVAAS
160 170 180 190 200
440 450
pF1KE6 PSSKSPKRQLEPTLKPL
>>XP_005257725 (OMIM: 610901) PREDICTED: charged multive (245 aa)
initn: 125 init1: 95 opt: 233 Z-score: 241.8 bits: 53.1 E(85289): 9.9e-07
Smith-Waterman score: 233; 25.9% identity (61.1% similar) in 216 aa overlap (228-441:7-213)
200 210 220 230 240 250
pF1KE6 YLVLLQLQKEKRVTVLEQNGEKIVKFARGPRAKVSPVNDVDVGVYQLMQSEQLLSRKVES
: : : :.. : .. :: :... : . .
XP_005 MGNLFGRKKQSRVTEQDKAILQLKQQRDKLRQYQKR
10 20 30
260 270 280 290 300 310
pF1KE6 LSQEAERCKEEARRACRAGKKQLALRSLKAKQRTEKRIEALHAKLDTVQGILDRIYASQT
..:. :: . ::. : :.:. : :: :. :. .. . .......... : .:
XP_005 IAQQLERERALARQLLRDGRKERAKLLLKKKRYQEQLLDRTENQISSLEAMVQSIEFTQI
40 50 60 70 80 90
320 330 340 350 360 370
pF1KE6 DQMVFNAYQAGVGALKLSMKDVTVEKAESLVDQIQELCDTQDEVSQTLAGGVTNGLDFDS
.. :... : : :. . ...:..: ..:. :: . : .... :::. : . :
XP_005 EMKVMEGLQFGNECLNKMHQVMSIEEVERILDETQEAVEYQRQIDELLAGSFT---QEDE
100 110 120 130 140 150
380 390 400 410 420 430
pF1KE6 EELEKELDILLQDTTKEPLDLPDNPRNRHFTNSVPNPRISDAE--LEAELEKLSLSEGGL
. . .::. . :.: ..::. : .. . ...:. . :. :: :: : ::.
XP_005 DAILEELSAI----TQEQIELPEVP-SEPLPEKIPGISMFDSFEWLEFAGEKWIL-EGNK
160 170 180 190 200
440 450
pF1KE6 VPSSKSPKRQLEPTLKPL
. :..
XP_005 TECSQAFLGRGQALLPGCLAWGRACLALGLGLGFPGVR
210 220 230 240
453 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:38:30 2016 done: Tue Nov 8 13:38:31 2016
Total Scan time: 9.050 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]