FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6471, 474 aa
  1>>>pF1KE6471 474 - 474 aa - 474 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3813+/-0.000947; mu= 17.3317+/- 0.056
 mean_var=69.5515+/-14.432, 0's: 0 Z-trim(104.9): 61  B-trim: 0 in 0/49
 Lambda= 0.153787
 statistics sampled from 8091 (8137) to 8091 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.25), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS2063.1 MFSD9 gene_id:84804|Hs108|chr2          ( 474) 3025 680.6 9.9e-196
CCDS7740.1 SLC22A18 gene_id:5002|Hs108|chr11       ( 424)  262 67.5 3.1e-11


>>CCDS2063.1 MFSD9 gene_id:84804|Hs108|chr2               (474 aa)
 initn: 3025 init1: 3025 opt: 3025  Z-score: 3627.5  bits: 680.6 E(32554): 9.9e-196
Smith-Waterman score: 3025; 100.0% identity (100.0% similar) in 474 aa overlap (1-474:1-474)

               10        20        30        40        50        60
pF1KE6 MELGGHWDMNSAPRLVSETAERKQEQKTGTEAEAADSGAVGARRFLLCLYLVGFLDLFGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MELGGHWDMNSAPRLVSETAERKQEQKTGTEAEAADSGAVGARRFLLCLYLVGFLDLFGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SMVVPLLSLHVKSLGASPTVAGIVGSSYGILQLFSSTLVGCWSDVVGRRSSLLACILLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 SMVVPLLSLHVKSLGASPTVAGIVGSSYGILQLFSSTLVGCWSDVVGRRSSLLACILLSA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LGYLLLGAATNVFLFVLARVPAGIFKHTLSISRALLSDVVPEKERPLVIGHFNTASGVGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 LGYLLLGAATNVFLFVLARVPAGIFKHTLSISRALLSDVVPEKERPLVIGHFNTASGVGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 ILGPVVGGYLTELEDGFYLTAFICFLVFILNAGLVWFFPWREAKPGSTEKGLPLRKTHVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 ILGPVVGGYLTELEDGFYLTAFICFLVFILNAGLVWFFPWREAKPGSTEKGLPLRKTHVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 LGRSHDTVQEAATSRRARASKKTAQPWVEVVLALRNMKNLLFSEMWDIFLVRLLMAMAVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 LGRSHDTVQEAATSRRARASKKTAQPWVEVVLALRNMKNLLFSEMWDIFLVRLLMAMAVM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 LYYSNFVLALEERFGVRPKVTGYLISYSSMLGAVAGLALGPILRLYKHNSQALLLHSSIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 LYYSNFVLALEERFGVRPKVTGYLISYSSMLGAVAGLALGPILRLYKHNSQALLLHSSIL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 TCTLLLLYSLAPTMGAVVLSSTLLSFSTAIGRTCITDLQLTVGGAQASGTLIGVGQSVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 TCTLLLLYSLAPTMGAVVLSSTLLSFSTAIGRTCITDLQLTVGGAQASGTLIGVGQSVTA
              370       380       390       400       410       420

              430       440       450       460       470    
pF1KE6 VGRIIAPLLSGVAQEVSPCGPPSLGAVLALVAIFIMSLNKRHSSGDGNSKLKSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 VGRIIAPLLSGVAQEVSPCGPPSLGAVLALVAIFIMSLNKRHSSGDGNSKLKSE
              430       440       450       460       470    

>>CCDS7740.1 SLC22A18 gene_id:5002|Hs108|chr11            (424 aa)
 initn: 264 init1: 115 opt: 262  Z-score: 315.1  bits: 67.5 E(32554): 3.1e-11
Smith-Waterman score: 354; 25.9% identity (55.1% similar) in 432 aa overlap (39-456:19-408)

       10        20        30        40        50        60        
pF1KE6 MNSAPRLVSETAERKQEQKTGTEAEAADSGAVGARRFLLCLYLVGFLDLFGVSM---VVP
                                     :.:    .:  :...  .:  . :   .::
CCDS77             MQGARAPRDQGRSPGRMSALGRSSVILLTYVLAATELTCLFMQFSIVP
                           10        20        30        40        

          70        80        90       100       110       120     
pF1KE6 LLSLHVKSLGASPTVAGIVGSSYGILQLFSSTLVGCWSDVVGRRSSLLACILLSALGYLL
        ::   ..:: .  . : . ...:.:::... . : ..:  : :..:   .: .   :::
CCDS77 YLS---RKLGLDSIAFGYLQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLL
       50           60        70        80        90       100     

         130            140       150       160       170       180
pF1KE6 LGAATN-----VFLFVLARVPAGIFKHTLSISRALLSDVVPEKERPLVIGHFNTASGVGF
       :.::..     :.:.  .:.: : . :::  .. ...:.   .::: ..:...   ::: 
CCDS77 LAAASSPALPGVYLLFASRLP-GALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGV
         110       120        130       140       150       160    

              190       200       210       220       230       240
pF1KE6 ILGPVVGGYLTELEDGFYLTAFICFLVFILNAGLVWFFPWREAKPGSTEKGLPLRKTHVL
       ::: ..:: :.    :.   :..  :. .:.: : .        :.::.           
CCDS77 ILGSLLGGTLVSAY-GIQCPAILAALATLLGAVLSF-----TCIPASTK-----------
          170        180       190            200                  

              250       260       270       280        290         
pF1KE6 LGRSHDTVQEAATSRRARASKKTAQPWVEVVLALRNMKNLL-FSEMWDIFLVRLLMAMAV
        : . :.  .:      :::          :. :. . .:: . ..  ::::..     .
CCDS77 -GAKTDA--QAPLPGGPRAS----------VFDLKAIASLLRLPDVPRIFLVKVASNCPT
        210         220                 230       240       250    

     300       310       320       330        340       350        
pF1KE6 MLYYSNFVLALEERFGVRPKVTGYLISYSSMLGAVA-GLALGPILRLYKHNSQALLLHSS
        :..  : .   . : ..   .:::.:. ..:  :. ::..:   .: .: :. .::..:
CCDS77 GLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGLVIG---QLSSHFSEEVLLRAS
          260       270       280       290          300       310 

      360       370       380           390       400       410    
pF1KE6 ILTCTLLLLYSLAPTMGAVVLSSTLLS----FSTAIGRTCITDLQLTVGGAQASGTLIGV
       .:   .... .:: .  . :.   ::     ::     .   .. . . ... .::..:.
CCDS77 VL---VFIVVGLAMAWMSSVFHFCLLVPGLVFSLCTLNVVTDSMLIKAVSTSDTGTMLGL
                320       330       340       350       360        

          420       430       440       450       460       470    
pF1KE6 GQSVTAVGRIIAPLLSGVAQEVSPCGPPSLGAVLALVAIFIMSLNKRHSSGDGNSKLKSE
         ::  . : ..: ..:.  .    : : .: : . .  ...                  
CCDS77 CASVQPLLRTLGPTVGGLLYR--SFGVPVFGHVQVAINTLVLLVLWRKPMPQRKDKVR  
      370       380         390       400       410       420      




474 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:37:19 2016 done: Tue Nov  8 13:37:19 2016
 Total Scan time:  2.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]