Result of FASTA (ccds) for
pFN21AE6460
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6460, 469 aa
1>>>pF1KE6460 469 - 469 aa - 469 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2303+/-0.000875; mu= 18.6182+/- 0.052
mean_var=69.3908+/-14.381, 0's: 0 Z-trim(106.9): 22 B-trim: 0 in 0/50
Lambda= 0.153965
statistics sampled from 9225 (9241) to 9225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.284), width: 16
Scan time: 2.790
The best scores are: opt bits E(32554)
CCDS13007.1 SLC52A3 gene_id:113278|Hs108|chr20 ( 469) 3130 704.4 6.6e-203
CCDS6423.1 SLC52A2 gene_id:79581|Hs108|chr8 ( 445) 544 129.9 5.2e-30
CCDS11066.1 SLC52A1 gene_id:55065|Hs108|chr17 ( 448) 530 126.8 4.5e-29
>>CCDS13007.1 SLC52A3 gene_id:113278|Hs108|chr20 (469 aa)
initn: 3130 init1: 3130 opt: 3130 Z-score: 3756.3 bits: 704.4 E(32554): 6.6e-203
Smith-Waterman score: 3130; 99.4% identity (99.6% similar) in 469 aa overlap (1-469:1-469)
10 20 30 40 50 60
pF1KE6 MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANIGPLLVTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 LHHFRPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LHHFRPSCLSEVPIIFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLTFFLALVDC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 TSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEISDSVPSPV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMACCLVAFFV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 LQRQPRCWEASVEDLLNDQVTLHSIRLREENDLGPAGMVDSSQGQGYLEEKAAPCCPAHL
:::::::::::::::::::::::::: :::::::::: ::::::::::::::::::::::
CCDS13 LQRQPRCWEASVEDLLNDQVTLHSIRPREENDLGPAGTVDSSQGQGYLEEKAAPCCPAHL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 AFVYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSL
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AFIYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVANPLASLVSMFLPNRSL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 LFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVLFSGCLSYVKVMLGVV
370 380 390 400 410 420
430 440 450 460
pF1KE6 LRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNLHCPA
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNLHCPA
430 440 450 460
>>CCDS6423.1 SLC52A2 gene_id:79581|Hs108|chr8 (445 aa)
initn: 1085 init1: 511 opt: 544 Z-score: 652.2 bits: 129.9 E(32554): 5.2e-30
Smith-Waterman score: 1048; 43.2% identity (65.5% similar) in 472 aa overlap (4-467:11-443)
10 20 30 40 50
pF1KE6 MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANI
: :::: .::::::...::.:::::..: :::::: ::::..:.. :.:.
CCDS64 MAAPTPARPVLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEGWSLPSYVSVLVALGNL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 GPLLVTLLHHFRPSCLSEVPI-IFTLLG-VGTVTCIIFAFLWNMTSWVLDGHHSIAFLVL
: :.::: ... :. .::: . .:: :::. ..: ::. .. : ::.:::.:
CCDS64 GLLVVTLWRRLAPGKDEQVPIRVVQVLGMVGTA---LLASLWHHVAPVAGQLHSVAFLAL
70 80 90 100 110
120 130 140 150 160 170
pF1KE6 TFFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTE
.: :::. :.:.::::::.:.:: .: .::.:.:::.::: ..::.:: : :
CCDS64 AFVLALACCASNVTFLPFLSHLPPRFLRSFFLGQGLSALLPCVLALVQGVGRLEC-----
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 ISDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMM
: :.: ... :: ::. :: :. :: .:: :. ..
CCDS64 -----P-PAP--------------INGTPG--PPLDFLE-RF-PAS----TFFWALTALL
180 190 200
240 250 260 270 280
pF1KE6 ACCLVAF--FVLQRQPRCWEASVED-LLNDQVTLHSIRLREENDLGPAGMVDSSQGQGYL
. .:: ..: : :: :.. . . . .:: . . . ::. :
CCDS64 VASAAAFQGLLLLLPP---PPSVPTGELGSGLQVGAPGAEEEVEESSPLQEPPSQAAGTT
210 220 230 240 250 260
290 300 310 320 330 340
pF1KE6 ---EEKAAPCCPAHLAFVYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVAN
. :: :. : . :.: .::::::.::.::..::: :: .:::::..:. .::
CCDS64 PGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSFSCLPYGRLAYHLAVVLGSAAN
270 280 290 300 310 320
350 360 370 380 390 400
pF1KE6 PLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVL
::: ...: . ::: :: ::.::. ::: ::.::.:::: : : .: ::.: ::::
CCDS64 PLACFLAMGVLCRSLAGLGGLSLLGVFCGGYLMALAVLSPCPPLVGTSAGVVLVVLSWVL
330 340 350 360 370 380
410 420 430 440 450 460
pF1KE6 FSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNL
: .::::: . .:. .: ::: :.:.:.::::::. ::: ... ..: : :
CCDS64 CLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAVAMFPPTSIYHVFHSRKDCAD
390 400 410 420 430 440
pF1KE6 HCPA
:
CCDS64 PCDS
>>CCDS11066.1 SLC52A1 gene_id:55065|Hs108|chr17 (448 aa)
initn: 1060 init1: 505 opt: 530 Z-score: 635.4 bits: 126.8 E(32554): 4.5e-29
Smith-Waterman score: 1025; 41.9% identity (64.4% similar) in 472 aa overlap (4-467:11-446)
10 20 30 40 50
pF1KE6 MAFLMHLLVCVFGMGSWVTINGLWVELPLLVMELPEGWYLPSYLTVVIQLANI
: :::: .::::::...::.:::::..: .::::: :::::.::. :.:.
CCDS11 MAAPTLGRLVLTHLLVALFGMGSWAAVNGIWVELPVVVKDLPEGWSLPSYLSVVVALGNL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 GPLLVTLLHHFRPSCLSEVPI-IFTLLGVGTVTCIIFAFLWNMTSWVLDGHHSIAFLVLT
: :.::: ... :. .::: . .:.: : ..: ::. .. : ::.:::.:.
CCDS11 GLLVVTLWRQLAPGKGEQVPIQVVQVLSV--VGTALLAPLWHHVAPVAGQLHSVAFLTLA
70 80 90 100 110
120 130 140 150 160 170
pF1KE6 FFLALVDCTSSVTFLPFMSRLPTYYLTTFFVGEGLSGLLPALVALAQGSGLTTCVNVTEI
. ::.. :::.::::::.:.:: .: .::.:.:::.::: ..::.:: : :
CCDS11 LVLAMACCTSNVTFLPFLSHLPPPFLRSFFLGQGLSALLPCVLALVQGVGRLEC------
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 SDSVPSPVPTRETDIAQGVPRALVSALPGMEAPLSHLESRYLPAHFSPLVFFLLLSIMMA
: :.:: :. : : ::. .: .: .:: :. ...
CCDS11 ----P-PAPTNGTS---G-P------------PLD------FPERFPASTFFWALTALLV
180 190 200
240 250 260 270 280
pF1KE6 CCLVAF----FVLQRQPRCWEASVEDLLNDQVTLHSIRLREENDLGPAGMVDSSQGQGYL
.:: ..: : .. :. . .::.. : . ::. : .
CCDS11 TSAAAFRGLLLLLPSLPSVTTGGSGPELQLGSPGAEEEEKEEEEALPL-QEPPSQAAGTI
210 220 230 240 250 260
290 300 310 320 330 340
pF1KE6 ---EEKAAPCCPAHLAFVYTLVAFVNALTNGMLPSVQTYSCLSYGPVAYHLAATLSIVAN
. .: :: ::. :.::..:.:::.:::::..::: :: .:::::..:. .::
CCDS11 PGPDPEAHQLFSAHGAFLLGLMAFTSAVTNGVLPSVQSFSCLPYGRLAYHLAVVLGSAAN
270 280 290 300 310 320
350 360 370 380 390 400
pF1KE6 PLASLVSMFLPNRSLLFLGVLSVLGTCFGGYNMAMAVMSPCPLLQGHWGGEVLIVASWVL
::: ...: . ::: : ::.:: ::.: ::.:..:::: : : .: ::.: ::::
CCDS11 PLACFLAMGVLCRSLAGLVGLSLLGMLFGAYLMALAILSPCPPLVGTTAGVVLVVLSWVL
330 340 350 360 370 380
410 420 430 440 450 460
pF1KE6 FSGCLSYVKVMLGVVLRDLSRSALLWCGAAVQLGSLLGALLMFPLVNVLRLFSSADFCNL
.::::: . .:. .: ::: :.:.:.:::::: ::: ... ..:.: :
CCDS11 CLCVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAGAMFPPTSIYHVFQSRKDCVD
390 400 410 420 430 440
pF1KE6 HCPA
:
CCDS11 PCGP
469 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:30:33 2016 done: Tue Nov 8 13:30:33 2016
Total Scan time: 2.790 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]