FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6458, 452 aa
  1>>>pF1KE6458 452 - 452 aa - 452 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8303+/-0.000899; mu= 14.0547+/- 0.054
 mean_var=63.1937+/-12.873, 0's: 0 Z-trim(105.3): 18  B-trim: 0 in 0/51
 Lambda= 0.161338
 statistics sampled from 8364 (8369) to 8364 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.257), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS11593.1 SCPEP1 gene_id:59342|Hs108|chr17       ( 452) 3040 716.5 1.4e-206
CCDS5419.1 CPVL gene_id:54504|Hs108|chr7           ( 476)  440 111.3 2.2e-24


>>CCDS11593.1 SCPEP1 gene_id:59342|Hs108|chr17            (452 aa)
 initn: 3040 init1: 3040 opt: 3040  Z-score: 3822.2  bits: 716.5 E(32554): 1.4e-206
Smith-Waterman score: 3040; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452)

               10        20        30        40        50        60
pF1KE6 MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRKDAYMFWWLYYATN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRKDAYMFWWLYYATN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPLDSDLKPRKTTWLQAASLLFVDNPVGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 GFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGGKMAAGIGLEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 YKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDKGLAEVSKVAEQVLNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESSLEFTQSHLVCLCQRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESSLEFTQSHLVCLCQRH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 VRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDFMKPVISIVDELLEAG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 INVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 INVTVYNGQLDLIVDTMGQEAWVRKLKWPELPKFSQLKWKALYSDPKSLETSAFVKSYKN
              370       380       390       400       410       420

              430       440       450  
pF1KE6 LAFYWILKAGHMVPSDQGDMALKMMRLVTQQE
       ::::::::::::::::::::::::::::::::
CCDS11 LAFYWILKAGHMVPSDQGDMALKMMRLVTQQE
              430       440       450  

>>CCDS5419.1 CPVL gene_id:54504|Hs108|chr7                (476 aa)
 initn: 475 init1: 300 opt: 440  Z-score: 551.2  bits: 111.3 E(32554): 2.2e-24
Smith-Waterman score: 524; 27.5% identity (57.7% similar) in 433 aa overlap (22-445:57-462)

                        10        20        30        40           
pF1KE6          MELALRRSPVPRWLLLLPLLLGLNAGAVIDWPTEEGKEVWDYVTVRK--DA
                                     : . . :  .:  . :    ..:: :  ..
CCDS54 LYRSVSMPPKGDSGQPLFLTPYIEAGKIQKGRELSLVGPFPGLNMKSYAGFLTVNKTYNS
         30        40        50        60        70        80      

      50        60        70        80        90           100     
pF1KE6 YMFWWLYYATNSCKNFSELPLVMWLQGGPGGSSTGFGNFEEIGPL----DSDLKPRKTTW
        .:.:.. :  . ..    :.:.::::::::::  :: : : ::     .  :. :   :
CCDS54 NLFFWFFPAQIQPED---APVVLWLQGGPGGSSM-FGLFVEHGPYVVTSNMTLRDRDFPW
         90       100          110        120       130       140  

         110       120       130       140       150       160     
pF1KE6 LQAASLLFVDNPVGTGFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFS
         . :.:..:::::::::... . .:: .   :: :..  :  ::.   :...  ::. .
CCDS54 TTTLSMLYIDNPVGTGFSFTDDTHGYAVNEDDVARDLYSALIQFFQIFPEYKNNDFYVTG
            150       160       170       180       190       200  

         170       180       190       200       210       220     
pF1KE6 ESYGGKMAAGIGLELYKAIQRGTIKCNFAGVALGDSWISPVDSVLSWGPYLYSMSLLEDK
       :::.::.. .:.  ...      .: :. :.:.::.. .: . . ... .::...::..:
CCDS54 ESYAGKYVPAIAHLIHSLNPVREVKINLNGIAIGDGYSDPESIIGGYAEFLYQIGLLDEK
            210       220       230       240       250       260  

         230       240       250       260       270       280     
pF1KE6 GLAEVSKVAEQVLNAVNKGLYREATELWGKAEMIIEQNTDGVNFYNILTKSTPTSTMESS
            .:  .. .. . :  . :: :.  :  .  . ..:   : :.    :  :.. . 
CCDS54 QKKYFQKQCHECIEHIRKQNWFEAFEILDKL-LDGDLTSDPSYFQNV----TGCSNYYNF
            270       280       290        300           310       

         290       300       310       320       330       340     
pF1KE6 LEFTQSHLVCLCQRHVRHLQRDALSQLMNGPIRKKLKIIPEDQSWGGQATNVFVNMEEDF
       :. :.       . .. ...  .: .     .:. ...   .:... ..: :   ..:: 
CCDS54 LRCTEP------EDQLYYVKFLSLPE-----VRQAIHV--GNQTFN-DGTIVEKYLREDT
       320             330            340         350        360   

         350       360       370       380          390       400  
pF1KE6 MKPVISIVDELLEAGINVTVYNGQLDLIVDTMGQEAWVRKLKWP---ELPKFSQLKWKAL
       .. :   . :... . .: .::::::.:: .   :  .  . :    :  :  .  :: .
CCDS54 VQSVKPWLTEIMN-NYKVLIYNGQLDIIVAAALTERSLMGMDWKGSQEYKKAEKKVWKIF
           370        380       390       400       410       420  

            410       420       430       440       450         
pF1KE6 YSDPKSLETSAFVKSYKNLAFYWILKAGHMVPSDQGDMALKMMRLVTQQE       
        ::    :.......  ..    :  .::..: ::   :. :.              
CCDS54 KSDS---EVAGYIRQAGDFHQVIIRGGGHILPYDQPLRAFDMINRFIYGKGWDPYVG
               430       440       450       460       470      




452 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:29:27 2016 done: Tue Nov  8 13:29:27 2016
 Total Scan time:  2.330 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]