FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6455, 569 aa
  1>>>pF1KE6455 569 - 569 aa - 569 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0306+/-0.00101; mu= -0.0293+/- 0.062
 mean_var=301.2741+/-61.505, 0's: 0 Z-trim(114.8): 24  B-trim: 0 in 0/53
 Lambda= 0.073891
 statistics sampled from 15372 (15395) to 15372 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.473), width:  16
 Scan time:  3.180

The best scores are:                                      opt bits E(32554)
CCDS7647.1 MMP21 gene_id:118856|Hs108|chr10        ( 569) 4040 444.1 2.1e-124


>>CCDS7647.1 MMP21 gene_id:118856|Hs108|chr10             (569 aa)
 initn: 4040 init1: 4040 opt: 4040  Z-score: 2346.8  bits: 444.1 E(32554): 2.1e-124
Smith-Waterman score: 4040; 100.0% identity (100.0% similar) in 569 aa overlap (1-569:1-569)

               10        20        30        40        50        60
pF1KE6 MLAASIFRPTLLLCWLAAPWPTQPESLFHSRDRSDLEPSPLRQAKPIADLHAAQRFLSRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MLAASIFRPTLLLCWLAAPWPTQPESLFHSRDRSDLEPSPLRQAKPIADLHAAQRFLSRY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GWSGVWAAWGPSPEGPPETPKGAALAEAVRRFQRANALPASGELDAATLAAMNRPRCGVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GWSGVWAAWGPSPEGPPETPKGAALAEAVRRFQRANALPASGELDAATLAAMNRPRCGVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DMRPPPPSAPPSPPGPPPRARSRRSPRAPLSLSRRGWQPRGYPDGGAAQAFSKRTLSWRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DMRPPPPSAPPSPPGPPPRARSRRSPRAPLSLSRRGWQPRGYPDGGAAQAFSKRTLSWRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LGEALSSQLSVADQRRIVALAFRMWSEVTPLDFREDLAAPGAAVDIKLGFGRGRHLGCPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LGEALSSQLSVADQRRIVALAFRMWSEVTPLDFREDLAAPGAAVDIKLGFGRGRHLGCPR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 AFDGSGQEFAHAWRLGDIHFDDDEHFTPPTSDTGISLLKVAVHEIGHVLGLPHTYRTGSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AFDGSGQEFAHAWRLGDIHFDDDEHFTPPTSDTGISLLKVAVHEIGHVLGLPHTYRTGSI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 MQPNYIPQEPAFELDWSDRKAIQKLYGSCEGSFDTAFDWIRKERNQYGEVMVRFSTYFFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MQPNYIPQEPAFELDWSDRKAIQKLYGSCEGSFDTAFDWIRKERNQYGEVMVRFSTYFFR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 NSWYWLYENRNNRTRYGDPIQILTGWPGIPTHNIDAFVHIWTWKRDERYFFQGNQYWRYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NSWYWLYENRNNRTRYGDPIQILTGWPGIPTHNIDAFVHIWTWKRDERYFFQGNQYWRYD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE6 SDKDQALTEDEQGKSYPKLISEGFPGIPSPLDTAFYDRRQKLIYFFKESLVFAFDVNRNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SDKDQALTEDEQGKSYPKLISEGFPGIPSPLDTAFYDRRQKLIYFFKESLVFAFDVNRNR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE6 VLNSYPKRITEVFPAVIPQNHPFRNIDSAYYSYAYNSIFFFKGNAYWKVVNDKDKQQNSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VLNSYPKRITEVFPAVIPQNHPFRNIDSAYYSYAYNSIFFFKGNAYWKVVNDKDKQQNSW
              490       500       510       520       530       540

              550       560         
pF1KE6 LPANGLFPKKFISEKWFDVCDVHISTLNM
       :::::::::::::::::::::::::::::
CCDS76 LPANGLFPKKFISEKWFDVCDVHISTLNM
              550       560         




569 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:27:35 2016 done: Tue Nov  8 13:27:36 2016
 Total Scan time:  3.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]