Result of FASTA (omim) for
pFN21AE6441
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6441, 464 aa
1>>>pF1KE6441 464 - 464 aa - 464 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0837+/-0.000336; mu= 18.6596+/- 0.021
mean_var=61.2749+/-12.362, 0's: 0 Z-trim(114.2): 16 B-trim: 43 in 2/52
Lambda= 0.163845
statistics sampled from 23920 (23929) to 23920 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.281), width: 16
Scan time: 5.900
The best scores are: opt bits E(85289)
NP_061982 (OMIM: 605907,608540) chitobiosyldiphosp ( 464) 3197 764.3 0
NP_001317433 (OMIM: 605907,608540) chitobiosyldiph ( 353) 2460 590.0 3.4e-168
XP_016878947 (OMIM: 605907,608540) PREDICTED: chit ( 353) 2460 590.0 3.4e-168
XP_016878946 (OMIM: 605907,608540) PREDICTED: chit ( 451) 1989 478.7 1.4e-134
>>NP_061982 (OMIM: 605907,608540) chitobiosyldiphosphodo (464 aa)
initn: 3197 init1: 3197 opt: 3197 Z-score: 4080.3 bits: 764.3 E(85289): 0
Smith-Waterman score: 3197; 99.8% identity (100.0% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KE6 MAASCLVLLALCLLLPLLLLGGWKRWRRGRAARHVVAVVLGDVGRSPRMQYHALSLAMHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MAASCLVLLALCLLLPLLLLGGWKRWRRGRAARHVVAVVLGDVGRSPRMQYHALSLAMHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 FSVTLLGFCNSKPHDELLQNNRIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 FSVTLLGFCNSKPHDELLQNNRIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 REPGAYIFLQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 REPGAYIFLQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 YEKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YEKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 HSPFRARSEPEDPVTERSAFTERDAGNGLVTRLRERPALLVSSTSWTEDEDFSILLAALE
::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
NP_061 HSPFRARSEPEDPVTERSAFTERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 KFEQLTLDGHNLPSLVCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 KFEQLTLDGHNLPSLVCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 DLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQL
370 380 390 400 410 420
430 440 450 460
pF1KE6 QMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLVMDT
::::::::::::::::::::::::::::::::::::::::::::
NP_061 QMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLVMDT
430 440 450 460
>>NP_001317433 (OMIM: 605907,608540) chitobiosyldiphosph (353 aa)
initn: 2460 init1: 2460 opt: 2460 Z-score: 3140.6 bits: 590.0 E(85289): 3.4e-168
Smith-Waterman score: 2460; 99.7% identity (100.0% similar) in 353 aa overlap (112-464:1-353)
90 100 110 120 130 140
pF1KE6 RIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMWREPGAYIFLQNPPGLPSIAVC
::::::::::::::::::::::::::::::
NP_001 MYLLWKLMWREPGAYIFLQNPPGLPSIAVC
10 20 30
150 160 170 180 190 200
pF1KE6 WFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKWYEKFFGRLSHLNLCVTNAMRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKWYEKFFGRLSHLNLCVTNAMRE
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE6 DLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFT
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE6 ERDAGNGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITG
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITG
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE6 KGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE6 MFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNL
280 290 300 310 320 330
450 460
pF1KE6 RESQQLRWDESWVQTVLPLVMDT
:::::::::::::::::::::::
NP_001 RESQQLRWDESWVQTVLPLVMDT
340 350
>>XP_016878947 (OMIM: 605907,608540) PREDICTED: chitobio (353 aa)
initn: 2460 init1: 2460 opt: 2460 Z-score: 3140.6 bits: 590.0 E(85289): 3.4e-168
Smith-Waterman score: 2460; 99.7% identity (100.0% similar) in 353 aa overlap (112-464:1-353)
90 100 110 120 130 140
pF1KE6 RIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMWREPGAYIFLQNPPGLPSIAVC
::::::::::::::::::::::::::::::
XP_016 MYLLWKLMWREPGAYIFLQNPPGLPSIAVC
10 20 30
150 160 170 180 190 200
pF1KE6 WFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKWYEKFFGRLSHLNLCVTNAMRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKWYEKFFGRLSHLNLCVTNAMRE
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE6 DLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFT
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE6 ERDAGNGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITG
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERDAGSGLVTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITG
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE6 KGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE6 MFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNL
280 290 300 310 320 330
450 460
pF1KE6 RESQQLRWDESWVQTVLPLVMDT
:::::::::::::::::::::::
XP_016 RESQQLRWDESWVQTVLPLVMDT
340 350
>>XP_016878946 (OMIM: 605907,608540) PREDICTED: chitobio (451 aa)
initn: 1989 init1: 1989 opt: 1989 Z-score: 2537.3 bits: 478.7 E(85289): 1.4e-134
Smith-Waterman score: 3084; 97.0% identity (97.2% similar) in 464 aa overlap (1-464:1-451)
10 20 30 40 50 60
pF1KE6 MAASCLVLLALCLLLPLLLLGGWKRWRRGRAARHVVAVVLGDVGRSPRMQYHALSLAMHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAASCLVLLALCLLLPLLLLGGWKRWRRGRAARHVVAVVLGDVGRSPRMQYHALSLAMHG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 FSVTLLGFCNSKPHDELLQNNRIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSVTLLGFCNSKPHDELLQNNRIQIVGLTELQSLAVGPRVFQYGVKVVLQAMYLLWKLMW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 REPGAYIFLQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REPGAYIFLQNPPGLPSIAVCWFVGCLCGSKLVIDWHNYGYSIMGLVHGPNHPLVLLAKW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 YEKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YEKFFGRLSHLNLCVTNAMREDLADNWHIRAVTVYDKPASFFKETPLDLQHRLFMKLGSM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 HSPFRARSEPEDPVTERSAFTERDAGNGLVTRLRERPALLVSSTSWTEDEDFSILLAALE
::::::::::::::::::::::::::.:::::::::::::::::::::
XP_016 HSPFRARSEPEDPVTERSAFTERDAGSGLVTRLRERPALLVSSTSWTE------------
250 260 270 280
310 320 330 340 350 360
pF1KE6 KFEQLTLDGHNLPSLVCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 -FEQLTLDGHNLPSLVCVITGKGPLREYYSRLIHQKHFQHIQVCTPWLEAEDYPLLLGSA
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE6 DLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLGVCLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAAQL
350 360 370 380 390 400
430 440 450 460
pF1KE6 QMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLVMDT
::::::::::::::::::::::::::::::::::::::::::::
XP_016 QMLFSNFPDPAGKLNQFRKNLRESQQLRWDESWVQTVLPLVMDT
410 420 430 440 450
464 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:20:07 2016 done: Tue Nov 8 13:20:08 2016
Total Scan time: 5.900 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]