FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6435, 473 aa
  1>>>pF1KE6435 473 - 473 aa - 473 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2205+/-0.000504; mu= 17.9130+/- 0.031
 mean_var=68.5478+/-14.863, 0's: 0 Z-trim(108.1): 40  B-trim: 0 in 0/50
 Lambda= 0.154909
 statistics sampled from 16120 (16138) to 16120 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.537), E-opt: 0.2 (0.189), width:  16
 Scan time:  5.030

The best scores are:                                      opt bits E(85289)
NP_116223 (OMIM: 603313,613688) dol-P-Glc:Glc(2)Ma ( 473) 3234 732.6 5.7e-211


>>NP_116223 (OMIM: 603313,613688) dol-P-Glc:Glc(2)Man(9)  (473 aa)
 initn: 3234 init1: 3234 opt: 3234  Z-score: 3908.6  bits: 732.6 E(85289): 5.7e-211
Smith-Waterman score: 3234; 100.0% identity (100.0% similar) in 473 aa overlap (1-473:1-473)

               10        20        30        40        50        60
pF1KE6 MAQLEGYYFSAALSCTFLVSCLLFSAFSRALREPYMDEIFHLPQAQRYCEGHFSLSQWDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MAQLEGYYFSAALSCTFLVSCLLFSAFSRALREPYMDEIFHLPQAQRYCEGHFSLSQWDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 MITTLPGLYLVSIGVIKPAIWIFGWSEHVVCSIGMLRFVNLLFSVGNFYLLYLLFCKVQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MITTLPGLYLVSIGVIKPAIWIFGWSEHVVCSIGMLRFVNLLFSVGNFYLLYLLFCKVQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 RNKAASSIQRVLSTLTLAVFPTLYFFNFLYYTEAGSMFFTLFAYLMCLYGNHKTSAFLGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 RNKAASSIQRVLSTLTLAVFPTLYFFNFLYYTEAGSMFFTLFAYLMCLYGNHKTSAFLGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 CGFMFRQTNIIWAVFCAGNVIAQKLTEAWKTELQKKEDRLPPIKGPFAEFRKILQFLLAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 CGFMFRQTNIIWAVFCAGNVIAQKLTEAWKTELQKKEDRLPPIKGPFAEFRKILQFLLAY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 SMSFKNLSMLLLLTWPYILLGFLFCAFVVVNGGIVIGDRSSHEACLHFPQLFYFFSFTLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 SMSFKNLSMLLLLTWPYILLGFLFCAFVVVNGGIVIGDRSSHEACLHFPQLFYFFSFTLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 FSFPHLLSPSKIKTFLSLVWKRRILFFVVTLVSVFLVWKFTYAHKYLLADNRHYTFYVWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 FSFPHLLSPSKIKTFLSLVWKRRILFFVVTLVSVFLVWKFTYAHKYLLADNRHYTFYVWK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 RVFQRYETVKYLLVPAYIFAGWSIADSLKSKSIFWNLMFFICLFTVIVPQKLLEFRYFIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 RVFQRYETVKYLLVPAYIFAGWSIADSLKSKSIFWNLMFFICLFTVIVPQKLLEFRYFIL
              370       380       390       400       410       420

              430       440       450       460       470   
pF1KE6 PYVIYRLNIPLPPTSRLICELSCYAVVNFITFFIFLNKTFQWPNSQDIQRFMW
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 PYVIYRLNIPLPPTSRLICELSCYAVVNFITFFIFLNKTFQWPNSQDIQRFMW
              430       440       450       460       470   




473 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:16:37 2016 done: Tue Nov  8 13:16:38 2016
 Total Scan time:  5.030 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]