Result of FASTA (ccds) for
pFN21AE6435
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6435, 473 aa
1>>>pF1KE6435 473 - 473 aa - 473 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3776+/-0.0011; mu= 16.8429+/- 0.065
mean_var=66.0114+/-14.112, 0's: 0 Z-trim(102.6): 45 B-trim: 475 in 1/48
Lambda= 0.157857
statistics sampled from 6987 (7009) to 6987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.569), E-opt: 0.2 (0.215), width: 16
Scan time: 2.170
The best scores are: opt bits E(32554)
CCDS41769.1 ALG10 gene_id:84920|Hs108|chr12 ( 473) 3234 746.0 2e-215
CCDS31772.1 ALG10B gene_id:144245|Hs108|chr12 ( 473) 3116 719.1 2.5e-207
CCDS76548.1 ALG10B gene_id:144245|Hs108|chr12 ( 126) 816 195.0 3.9e-50
>>CCDS41769.1 ALG10 gene_id:84920|Hs108|chr12 (473 aa)
initn: 3234 init1: 3234 opt: 3234 Z-score: 3980.9 bits: 746.0 E(32554): 2e-215
Smith-Waterman score: 3234; 100.0% identity (100.0% similar) in 473 aa overlap (1-473:1-473)
10 20 30 40 50 60
pF1KE6 MAQLEGYYFSAALSCTFLVSCLLFSAFSRALREPYMDEIFHLPQAQRYCEGHFSLSQWDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAQLEGYYFSAALSCTFLVSCLLFSAFSRALREPYMDEIFHLPQAQRYCEGHFSLSQWDP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 MITTLPGLYLVSIGVIKPAIWIFGWSEHVVCSIGMLRFVNLLFSVGNFYLLYLLFCKVQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MITTLPGLYLVSIGVIKPAIWIFGWSEHVVCSIGMLRFVNLLFSVGNFYLLYLLFCKVQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 RNKAASSIQRVLSTLTLAVFPTLYFFNFLYYTEAGSMFFTLFAYLMCLYGNHKTSAFLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RNKAASSIQRVLSTLTLAVFPTLYFFNFLYYTEAGSMFFTLFAYLMCLYGNHKTSAFLGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 CGFMFRQTNIIWAVFCAGNVIAQKLTEAWKTELQKKEDRLPPIKGPFAEFRKILQFLLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CGFMFRQTNIIWAVFCAGNVIAQKLTEAWKTELQKKEDRLPPIKGPFAEFRKILQFLLAY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 SMSFKNLSMLLLLTWPYILLGFLFCAFVVVNGGIVIGDRSSHEACLHFPQLFYFFSFTLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SMSFKNLSMLLLLTWPYILLGFLFCAFVVVNGGIVIGDRSSHEACLHFPQLFYFFSFTLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 FSFPHLLSPSKIKTFLSLVWKRRILFFVVTLVSVFLVWKFTYAHKYLLADNRHYTFYVWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FSFPHLLSPSKIKTFLSLVWKRRILFFVVTLVSVFLVWKFTYAHKYLLADNRHYTFYVWK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 RVFQRYETVKYLLVPAYIFAGWSIADSLKSKSIFWNLMFFICLFTVIVPQKLLEFRYFIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RVFQRYETVKYLLVPAYIFAGWSIADSLKSKSIFWNLMFFICLFTVIVPQKLLEFRYFIL
370 380 390 400 410 420
430 440 450 460 470
pF1KE6 PYVIYRLNIPLPPTSRLICELSCYAVVNFITFFIFLNKTFQWPNSQDIQRFMW
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PYVIYRLNIPLPPTSRLICELSCYAVVNFITFFIFLNKTFQWPNSQDIQRFMW
430 440 450 460 470
>>CCDS31772.1 ALG10B gene_id:144245|Hs108|chr12 (473 aa)
initn: 3116 init1: 3116 opt: 3116 Z-score: 3835.7 bits: 719.1 E(32554): 2.5e-207
Smith-Waterman score: 3116; 96.0% identity (98.1% similar) in 473 aa overlap (1-473:1-473)
10 20 30 40 50 60
pF1KE6 MAQLEGYYFSAALSCTFLVSCLLFSAFSRALREPYMDEIFHLPQAQRYCEGHFSLSQWDP
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAQLEGYCFSAALSCTFLVSCLLFSAFSRALREPYMDEIFHLPQAQRYCEGHFSLSQWDP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 MITTLPGLYLVSIGVIKPAIWIFGWSEHVVCSIGMLRFVNLLFSVGNFYLLYLLFCKVQP
::::::::::::.::.:::::::.::::::::::::::::::::::::::::::: ::::
CCDS31 MITTLPGLYLVSVGVVKPAIWIFAWSEHVVCSIGMLRFVNLLFSVGNFYLLYLLFHKVQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 RNKAASSIQRVLSTLTLAVFPTLYFFNFLYYTEAGSMFFTLFAYLMCLYGNHKTSAFLGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RNKAASSIQRVLSTLTLAVFPTLYFFNFLYYTEAGSMFFTLFAYLMCLYGNHKTSAFLGF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 CGFMFRQTNIIWAVFCAGNVIAQKLTEAWKTELQKKEDRLPPIKGPFAEFRKILQFLLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CGFMFRQTNIIWAVFCAGNVIAQKLTEAWKTELQKKEDRLPPIKGPFAEFRKILQFLLAY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 SMSFKNLSMLLLLTWPYILLGFLFCAFVVVNGGIVIGDRSSHEACLHFPQLFYFFSFTLF
::::::::::. ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SMSFKNLSMLFCLTWPYILLGFLFCAFVVVNGGIVIGDRSSHEACLHFPQLFYFFSFTLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 FSFPHLLSPSKIKTFLSLVWKRRILFFVVTLVSVFLVWKFTYAHKYLLADNRHYTFYVWK
:::::::::::::::::::::. :::.:::::::::::::::::::::::::::::::::
CCDS31 FSFPHLLSPSKIKTFLSLVWKHGILFLVVTLVSVFLVWKFTYAHKYLLADNRHYTFYVWK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 RVFQRYETVKYLLVPAYIFAGWSIADSLKSKSIFWNLMFFICLFTVIVPQKLLEFRYFIL
:::::: .:::::::::::::::::::::: :::::::::::: :::::::::::::::
CCDS31 RVFQRYAILKYLLVPAYIFAGWSIADSLKSKPIFWNLMFFICLFIVIVPQKLLEFRYFIL
370 380 390 400 410 420
430 440 450 460 470
pF1KE6 PYVIYRLNIPLPPTSRLICELSCYAVVNFITFFIFLNKTFQWPNSQDIQRFMW
::::::::: :::::::.:::::::.::::::.::::::::::::::::::::
CCDS31 PYVIYRLNITLPPTSRLVCELSCYAIVNFITFYIFLNKTFQWPNSQDIQRFMW
430 440 450 460 470
>>CCDS76548.1 ALG10B gene_id:144245|Hs108|chr12 (126 aa)
initn: 816 init1: 816 opt: 816 Z-score: 1013.6 bits: 195.0 E(32554): 3.9e-50
Smith-Waterman score: 816; 95.9% identity (98.4% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KE6 MAQLEGYYFSAALSCTFLVSCLLFSAFSRALREPYMDEIFHLPQAQRYCEGHFSLSQWDP
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MAQLEGYCFSAALSCTFLVSCLLFSAFSRALREPYMDEIFHLPQAQRYCEGHFSLSQWDP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 MITTLPGLYLVSIGVIKPAIWIFGWSEHVVCSIGMLRFVNLLFSVGNFYLLYLLFCKVQP
::::::::::::.::.:::::::.::::::::::::::::::::::::::::::: ::::
CCDS76 MITTLPGLYLVSVGVVKPAIWIFAWSEHVVCSIGMLRFVNLLFSVGNFYLLYLLFHKVQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 RNKAASSIQRVLSTLTLAVFPTLYFFNFLYYTEAGSMFFTLFAYLMCLYGNHKTSAFLGF
:::
CCDS76 RNKEYF
473 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:16:37 2016 done: Tue Nov 8 13:16:37 2016
Total Scan time: 2.170 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]