FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6433, 447 aa
  1>>>pF1KE6433 447 - 447 aa - 447 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9994+/-0.000346; mu= 19.6266+/- 0.022
 mean_var=67.1848+/-13.997, 0's: 0 Z-trim(115.3): 12  B-trim: 379 in 2/50
 Lambda= 0.156473
 statistics sampled from 25635 (25646) to 25635 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.301), width:  16
 Scan time:  8.580

The best scores are:                                      opt bits E(85289)
NP_002399 (OMIM: 212066,602616) alpha-1,6-mannosyl ( 447) 3120 713.2 3.5e-205


>>NP_002399 (OMIM: 212066,602616) alpha-1,6-mannosyl-gly  (447 aa)
 initn: 3120 init1: 3120 opt: 3120  Z-score: 3804.6  bits: 713.2 E(85289): 3.5e-205
Smith-Waterman score: 3120; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:1-447)

               10        20        30        40        50        60
pF1KE6 MRFRIYKRKVLILTLVVAACGFVLWSSNGRQRKNEALAPPLLDAEPARGAGGRGGDHPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MRFRIYKRKVLILTLVVAACGFVLWSSNGRQRKNEALAPPLLDAEPARGAGGRGGDHPSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AVGIRRVSNVSAASLVPAVPQPEADNLTLRYRSLVYQLNFDQTLRNVDKAGTWAPRELVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AVGIRRVSNVSAASLVPAVPQPEADNLTLRYRSLVYQLNFDQTLRNVDKAGTWAPRELVL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VVQVHNRPEYLRLLLDSLRKAQGIDNVLVIFSHDFWSTEINQLIAGVNFCPVLQVFFPFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VVQVHNRPEYLRLLLDSLRKAQGIDNVLVIFSHDFWSTEINQLIAGVNFCPVLQVFFPFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 IQLYPNEFPGSDPRDCPRDLPKNAALKLGCINAEYPDSFGHYREAKFSQTKHHWWWKLHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IQLYPNEFPGSDPRDCPRDLPKNAALKLGCINAEYPDSFGHYREAKFSQTKHHWWWKLHF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VWERVKILRDYAGLILFLEEDHYLAPDFYHVFKKMWKLKQQECPECDVLSLGTYSASRSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VWERVKILRDYAGLILFLEEDHYLAPDFYHVFKKMWKLKQQECPECDVLSLGTYSASRSF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 YGMADKVDVKTWKSTEHNMGLALTRNAYQKLIECTDTFCTYDDYNWDWTLQYLTVSCLPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YGMADKVDVKTWKSTEHNMGLALTRNAYQKLIECTDTFCTYDDYNWDWTLQYLTVSCLPK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 FWKVLVPQIPRIFHAGDCGMHHKKTCRPSTQSAQIESLLNNNKQYMFPETLTISEKFTVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FWKVLVPQIPRIFHAGDCGMHHKKTCRPSTQSAQIESLLNNNKQYMFPETLTISEKFTVV
              370       380       390       400       410       420

              430       440       
pF1KE6 AISPPRKNGGWGDIRDHELCKSYRRLQ
       :::::::::::::::::::::::::::
NP_002 AISPPRKNGGWGDIRDHELCKSYRRLQ
              430       440       




447 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:15:31 2016 done: Tue Nov  8 13:15:32 2016
 Total Scan time:  8.580 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]