FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6433, 447 aa
  1>>>pF1KE6433 447 - 447 aa - 447 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1558+/-0.000751; mu= 18.4606+/- 0.046
 mean_var=65.0535+/-13.201, 0's: 0 Z-trim(108.7): 6  B-trim: 357 in 1/49
 Lambda= 0.159015
 statistics sampled from 10403 (10407) to 10403 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.32), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS9690.1 MGAT2 gene_id:4247|Hs108|chr14          ( 447) 3120 724.4 5.6e-209


>>CCDS9690.1 MGAT2 gene_id:4247|Hs108|chr14               (447 aa)
 initn: 3120 init1: 3120 opt: 3120  Z-score: 3865.3  bits: 724.4 E(32554): 5.6e-209
Smith-Waterman score: 3120; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:1-447)

               10        20        30        40        50        60
pF1KE6 MRFRIYKRKVLILTLVVAACGFVLWSSNGRQRKNEALAPPLLDAEPARGAGGRGGDHPSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MRFRIYKRKVLILTLVVAACGFVLWSSNGRQRKNEALAPPLLDAEPARGAGGRGGDHPSV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 AVGIRRVSNVSAASLVPAVPQPEADNLTLRYRSLVYQLNFDQTLRNVDKAGTWAPRELVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 AVGIRRVSNVSAASLVPAVPQPEADNLTLRYRSLVYQLNFDQTLRNVDKAGTWAPRELVL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 VVQVHNRPEYLRLLLDSLRKAQGIDNVLVIFSHDFWSTEINQLIAGVNFCPVLQVFFPFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VVQVHNRPEYLRLLLDSLRKAQGIDNVLVIFSHDFWSTEINQLIAGVNFCPVLQVFFPFS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 IQLYPNEFPGSDPRDCPRDLPKNAALKLGCINAEYPDSFGHYREAKFSQTKHHWWWKLHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 IQLYPNEFPGSDPRDCPRDLPKNAALKLGCINAEYPDSFGHYREAKFSQTKHHWWWKLHF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VWERVKILRDYAGLILFLEEDHYLAPDFYHVFKKMWKLKQQECPECDVLSLGTYSASRSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 VWERVKILRDYAGLILFLEEDHYLAPDFYHVFKKMWKLKQQECPECDVLSLGTYSASRSF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 YGMADKVDVKTWKSTEHNMGLALTRNAYQKLIECTDTFCTYDDYNWDWTLQYLTVSCLPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 YGMADKVDVKTWKSTEHNMGLALTRNAYQKLIECTDTFCTYDDYNWDWTLQYLTVSCLPK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 FWKVLVPQIPRIFHAGDCGMHHKKTCRPSTQSAQIESLLNNNKQYMFPETLTISEKFTVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 FWKVLVPQIPRIFHAGDCGMHHKKTCRPSTQSAQIESLLNNNKQYMFPETLTISEKFTVV
              370       380       390       400       410       420

              430       440       
pF1KE6 AISPPRKNGGWGDIRDHELCKSYRRLQ
       :::::::::::::::::::::::::::
CCDS96 AISPPRKNGGWGDIRDHELCKSYRRLQ
              430       440       




447 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 13:15:30 2016 done: Tue Nov  8 13:15:31 2016
 Total Scan time:  3.090 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]