Result of FASTA (omim) for
pFN21AE6429
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6429, 595 aa
1>>>pF1KE6429 595 - 595 aa - 595 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.3313+/-0.000546; mu= -5.6432+/- 0.033
mean_var=286.6593+/-61.498, 0's: 0 Z-trim(115.3): 35 B-trim: 291 in 1/52
Lambda= 0.075752
statistics sampled from 25688 (25719) to 25688 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.302), width: 16
Scan time: 7.390
The best scores are: opt bits E(85289)
NP_001294869 (OMIM: 300603,300604) protein POF1B i ( 595) 3977 449.0 2e-125
NP_079197 (OMIM: 300603,300604) protein POF1B isof ( 589) 3931 444.0 6.6e-124
XP_005262260 (OMIM: 300603,300604) PREDICTED: prot ( 574) 2596 298.1 5.4e-80
>>NP_001294869 (OMIM: 300603,300604) protein POF1B isofo (595 aa)
initn: 3977 init1: 3977 opt: 3977 Z-score: 2372.6 bits: 449.0 E(85289): 2e-125
Smith-Waterman score: 3977; 99.8% identity (100.0% similar) in 595 aa overlap (1-595:1-595)
10 20 30 40 50 60
pF1KE6 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDLTSLENDKMRLE
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
NP_001 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDMTSLENDKMRLE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST
490 500 510 520 530 540
550 560 570 580 590
pF1KE6 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCVSSLGHF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCVSSLGHF
550 560 570 580 590
>>NP_079197 (OMIM: 300603,300604) protein POF1B isoform (589 aa)
initn: 3931 init1: 3931 opt: 3931 Z-score: 2345.5 bits: 444.0 E(85289): 6.6e-124
Smith-Waterman score: 3931; 99.8% identity (100.0% similar) in 588 aa overlap (1-588:1-588)
10 20 30 40 50 60
pF1KE6 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDLTSLENDKMRLE
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
NP_079 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDMTSLENDKMRLE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST
490 500 510 520 530 540
550 560 570 580 590
pF1KE6 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCVSSLGHF
::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCP
550 560 570 580
>>XP_005262260 (OMIM: 300603,300604) PREDICTED: protein (574 aa)
initn: 2596 init1: 2596 opt: 2596 Z-score: 1557.2 bits: 298.1 E(85289): 5.4e-80
Smith-Waterman score: 3764; 97.3% identity (97.4% similar) in 588 aa overlap (1-588:1-573)
10 20 30 40 50 60
pF1KE6 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSSSYWSETSSSSCGTQQLPEVLQCQPQHYHCYHQSSQAQQPPEKNVVYERVRTYSGPMN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KVVQALDPFNSREVLSPLKTTSSYQNLVWSDHSQELHSPTLKISTCAPSTLHITQNTEQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHSPTVKLTTYPQTTIRKYVVQNPEQEPLSQFLRGSHFFPGNNVIYEKTIRKVEKLNTDQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 GCHPQAQCHHHIIQQPQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE
:::::::::::::::::::::::::::::::::::::::::::::
XP_005 ---------------PQVIHSAHWQQPDSSQQIQAITGNNPISTHIGNELCHSGSSQICE
190 200 210 220
250 260 270 280 290 300
pF1KE6 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QVIIQDDGPEKLDPRYFGELLADLSRKNTDLYHCLLEHLQRIGGSKQDFESTDESEDIES
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE6 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDLTSLENDKMRLE
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
XP_005 LIPKGLSEFTKQQIRYILQMRGMSDKSLRLVLSTFSNIREELGHLQNDMTSLENDKMRLE
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE6 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KDLSFKDTQLKEYEELLASVRANNHQQQQGLQDSSSKCQALEENNLSLRHTLSDMEYRLK
350 360 370 380 390 400
430 440 450 460 470 480
pF1KE6 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELEYCKRNLEQENQNLRMQVSETCTGPMLQAKMDEIGNHYTEMVKNLRMEKDREICRLRS
410 420 430 440 450 460
490 500 510 520 530 540
pF1KE6 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLNQYHKDVSKREGSCSDFQFKLHELTSLLEEKDSLIKRQSEELSKLRQEIYSSHNQPST
470 480 490 500 510 520
550 560 570 580 590
pF1KE6 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCVSSLGHF
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GGRTTITTKKYRTQYPILGLLYDDYEYIPPGSETQTIVIEKTEDKYTCP
530 540 550 560 570
595 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 13:12:33 2016 done: Tue Nov 8 13:12:34 2016
Total Scan time: 7.390 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]