FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6397, 223 aa
  1>>>pF1KE6397 223 - 223 aa - 223 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7747+/-0.000865; mu= -0.3209+/- 0.052
 mean_var=202.1591+/-41.206, 0's: 0 Z-trim(115.0): 7  B-trim: 148 in 1/52
 Lambda= 0.090204
 statistics sampled from 15507 (15510) to 15507 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.476), width:  16
 Scan time:  1.440

The best scores are:                                      opt bits E(32554)
CCDS43603.1 RHBDD2 gene_id:57414|Hs108|chr7        ( 223) 1525 209.8 1.1e-54
CCDS43602.1 RHBDD2 gene_id:57414|Hs108|chr7        ( 364) 1525 210.0 1.6e-54


>>CCDS43603.1 RHBDD2 gene_id:57414|Hs108|chr7             (223 aa)
 initn: 1525 init1: 1525 opt: 1525  Z-score: 1095.2  bits: 209.8 E(32554): 1.1e-54
Smith-Waterman score: 1525; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KE6 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLIPQTSFLSNVCGLSIGLAYGLTYC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQPASGLCYVQNHFGPNPTSSSVYP
              130       140       150       160       170       180

              190       200       210       220   
pF1KE6 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP
       :::::::::::::::::::::::::::::::::::::::::::
CCDS43 ASAGTSLGIQPPTPVNSPGTVYSGALGTPGAAGSKESSRVPMP
              190       200       210       220   

>>CCDS43602.1 RHBDD2 gene_id:57414|Hs108|chr7             (364 aa)
 initn: 1525 init1: 1525 opt: 1525  Z-score: 1092.2  bits: 210.0 E(32554): 1.6e-54
Smith-Waterman score: 1525; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:142-364)

                                             10        20        30
pF1KE6                               MLGVTTVRSRMRRALVFGMVVPSVLVPWLL
                                     ::::::::::::::::::::::::::::::
CCDS43 IIFLSFEAVSSLSKLGEVEDARGFTPVAFAMLGVTTVRSRMRRALVFGMVVPSVLVPWLL
             120       130       140       150       160       170 

               40        50        60        70        80        90
pF1KE6 LGASWLIPQTSFLSNVCGLSIGLAYGLTYCYSIDLSERVALKLDQTFPFSLMRRISVFKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LGASWLIPQTSFLSNVCGLSIGLAYGLTYCYSIDLSERVALKLDQTFPFSLMRRISVFKY
             180       190       200       210       220       230 

              100       110       120       130       140       150
pF1KE6 VSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHM
             240       250       260       270       280       290 

              160       170       180       190       200       210
pF1KE6 PTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PTLPPYQPASGLCYVQNHFGPNPTSSSVYPASAGTSLGIQPPTPVNSPGTVYSGALGTPG
             300       310       320       330       340       350 

              220   
pF1KE6 AAGSKESSRVPMP
       :::::::::::::
CCDS43 AAGSKESSRVPMP
             360    




223 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:43:11 2016 done: Tue Nov  8 12:43:11 2016
 Total Scan time:  1.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]