FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6391, 414 aa
  1>>>pF1KE6391 414 - 414 aa - 414 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6333+/-0.0012; mu= 6.3629+/- 0.071
 mean_var=136.6579+/-26.494, 0's: 0 Z-trim(105.8): 31  B-trim: 11 in 1/51
 Lambda= 0.109713
 statistics sampled from 8595 (8598) to 8595 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.264), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS9537.1 TMCO3 gene_id:55002|Hs108|chr13         ( 677) 2662 433.3 3.3e-121


>>CCDS9537.1 TMCO3 gene_id:55002|Hs108|chr13              (677 aa)
 initn: 2662 init1: 2662 opt: 2662  Z-score: 2289.5  bits: 433.3 E(32554): 3.3e-121
Smith-Waterman score: 2662; 99.8% identity (100.0% similar) in 410 aa overlap (1-410:1-410)

               10        20        30        40        50        60
pF1KE6 MKVLGRSFFWVLFPVLPWAVQAVEHEEVAQRVIKLHRGRGVAAMQSRQWVRDSCRKLSGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MKVLGRSFFWVLFPVLPWAVQAVEHEEVAQRVIKLHRGRGVAAMQSRQWVRDSCRKLSGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LRQKNAVLNKLKTAIGAVEKDVGLSDEEKLFQVHTFEIFQKELNESENSVFQAVYGLQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LRQKNAVLNKLKTAIGAVEKDVGLSDEEKLFQVHTFEIFQKELNESENSVFQAVYGLQRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LQGDYKDVVNMKESSRQRLEALREAAIKEETEYMELLAAEKHQVEALKNMQHQNQSLSML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LQGDYKDVVNMKESSRQRLEALREAAIKEETEYMELLAAEKHQVEALKNMQHQNQSLSML
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 DEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEANSKQNITKREVEDDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 DEILEDVRKAADRLEEEIEEHAFDDNKSVKGVNFEAVLRVEEEEANSKQNITKREVEDDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 GLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTAIGLPTMFGYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 GLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGMLSLPCGWLCTAIGLPTMFGYI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 ICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWKISLQGPCYMTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 ICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWKISLQGPCYMTL
              310       320       330       340       350       360

              370       380       390       400       410          
pF1KE6 LMIAFGLLWGHLLRIKPTQSVFISTCLSLSSTPLVSRFLMGSARGDKEGNRTAL      
       :::::::::::::::::::::::::::::::::::::::::::::::::.          
CCDS95 LMIAFGLLWGHLLRIKPTQSVFISTCLSLSSTPLVSRFLMGSARGDKEGDIDYSTVLLGM
              370       380       390       400       410       420

CCDS95 LVTQDVQLGLFMAVMPTLIQAGASASSSIVVEVLRILVLIGQILFSLAAVFLLCLVIKKY
              430       440       450       460       470       480




414 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:51:15 2016 done: Tue Nov  8 12:51:16 2016
 Total Scan time:  2.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]