FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6390, 418 aa
  1>>>pF1KE6390 418 - 418 aa - 418 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7634+/-0.000421; mu= 20.0071+/- 0.026
 mean_var=56.8868+/-11.612, 0's: 0 Z-trim(108.6): 39  B-trim: 0 in 0/52
 Lambda= 0.170047
 statistics sampled from 16706 (16728) to 16706 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.55), E-opt: 0.2 (0.196), width:  16
 Scan time:  5.680

The best scores are:                                      opt bits E(85289)
NP_037468 (OMIM: 609213,617056) protein transport  ( 476) 2582 642.1 8.7e-184


>>NP_037468 (OMIM: 609213,617056) protein transport prot  (476 aa)
 initn: 2582 init1: 2582 opt: 2582  Z-score: 3420.6  bits: 642.1 E(85289): 8.7e-184
Smith-Waterman score: 2582; 93.2% identity (99.3% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KE6 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
       :.:::::::::::..:::::::::::::.:::::::::::::::::::::::::::::::
NP_037 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
       :::::::.::::::::::::.:::::::::: ::::::::::::::::::::::::::::
NP_037 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP
       ::::::::::::::::::::.::::: :::::.:::::::::::::::::::::::::::
NP_037 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
       ::::::::.:::::::::::::::::::::::::::..::::::::::::::::::::::
NP_037 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH
       :::::::::.:::::.::.::: :.:.:.:::::.:::::::::::::::.:...:::::
NP_037 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH
              310       320       330       340       350       360

              370       380       390       400       410          
pF1KE6 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNSARA  
       .::::.:::::::::::::::::::::::::::::::::::::::.::::::::      
NP_037 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA
              370       380       390       400       410       420

NP_037 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF
              430       440       450       460       470      




418 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:50:47 2016 done: Tue Nov  8 12:50:48 2016
 Total Scan time:  5.680 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]