Result of FASTA (ccds) for
pFN21AE6390
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6390, 418 aa
1>>>pF1KE6390 418 - 418 aa - 418 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1304+/- 0.001; mu= 17.7548+/- 0.060
mean_var=59.0580+/-12.057, 0's: 0 Z-trim(102.5): 35 B-trim: 0 in 0/50
Lambda= 0.166892
statistics sampled from 6981 (6998) to 6981 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.574), E-opt: 0.2 (0.215), width: 16
Scan time: 1.460
The best scores are: opt bits E(32554)
CCDS44358.1 SEC61A2 gene_id:55176|Hs108|chr10 ( 437) 2709 661.0 6.2e-190
CCDS7088.1 SEC61A2 gene_id:55176|Hs108|chr10 ( 476) 2708 660.8 7.9e-190
CCDS3046.1 SEC61A1 gene_id:29927|Hs108|chr3 ( 476) 2582 630.4 1.1e-180
CCDS44359.1 SEC61A2 gene_id:55176|Hs108|chr10 ( 454) 2387 583.5 1.4e-166
>>CCDS44358.1 SEC61A2 gene_id:55176|Hs108|chr10 (437 aa)
initn: 2709 init1: 2709 opt: 2709 Z-score: 3523.4 bits: 661.0 E(32554): 6.2e-190
Smith-Waterman score: 2709; 99.3% identity (99.5% similar) in 417 aa overlap (1-417:1-417)
10 20 30 40 50 60
pF1KE6 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH
310 320 330 340 350 360
370 380 390 400 410
pF1KE6 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNSARA
:::::::::::::::::::::::::::::::::::::::::::::::::::::: .
CCDS44 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRPKVKL
370 380 390 400 410 420
CCDS44 RRWKGEGRHFTKRILFY
430
>>CCDS7088.1 SEC61A2 gene_id:55176|Hs108|chr10 (476 aa)
initn: 2708 init1: 2708 opt: 2708 Z-score: 3521.5 bits: 660.8 E(32554): 7.9e-190
Smith-Waterman score: 2708; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KE6 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH
310 320 330 340 350 360
370 380 390 400 410
pF1KE6 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNSARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTA
370 380 390 400 410 420
CCDS70 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF
430 440 450 460 470
>>CCDS3046.1 SEC61A1 gene_id:29927|Hs108|chr3 (476 aa)
initn: 2582 init1: 2582 opt: 2582 Z-score: 3357.5 bits: 630.4 E(32554): 1.1e-180
Smith-Waterman score: 2582; 93.2% identity (99.3% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KE6 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
:.:::::::::::..:::::::::::::.:::::::::::::::::::::::::::::::
CCDS30 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
:::::::.::::::::::::.:::::::::: ::::::::::::::::::::::::::::
CCDS30 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP
::::::::::::::::::::.::::: :::::.:::::::::::::::::::::::::::
CCDS30 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
::::::::.:::::::::::::::::::::::::::..::::::::::::::::::::::
CCDS30 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH
:::::::::.:::::.::.::: :.:.:.:::::.:::::::::::::::.:...:::::
CCDS30 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH
310 320 330 340 350 360
370 380 390 400 410
pF1KE6 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNSARA
.::::.:::::::::::::::::::::::::::::::::::::::.::::::::
CCDS30 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA
370 380 390 400 410 420
CCDS30 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF
430 440 450 460 470
>>CCDS44359.1 SEC61A2 gene_id:55176|Hs108|chr10 (454 aa)
initn: 2387 init1: 2387 opt: 2387 Z-score: 3104.1 bits: 583.5 E(32554): 1.4e-166
Smith-Waterman score: 2501; 94.7% identity (94.7% similar) in 414 aa overlap (1-414:1-392)
10 20 30 40 50 60
pF1KE6 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD
:::::::::::::::::::::::::: ::::::::::::
CCDS44 MGIKFLEVIKPFCAVLPEIQKPERKI----------------------PLFGIMSSDSAD
10 20 30
70 80 90 100 110 120
pF1KE6 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE6 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE6 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE6 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE6 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH
280 290 300 310 320 330
370 380 390 400 410
pF1KE6 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNSARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTA
340 350 360 370 380 390
CCDS44 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF
400 410 420 430 440 450
418 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:50:46 2016 done: Tue Nov 8 12:50:47 2016
Total Scan time: 1.460 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]