Result of FASTA (ccds) for
pFN21AE6383
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6383, 329 aa
1>>>pF1KE6383 329 - 329 aa - 329 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1447+/-0.00075; mu= 17.0229+/- 0.045
mean_var=66.1126+/-13.193, 0's: 0 Z-trim(108.2): 12 B-trim: 0 in 0/49
Lambda= 0.157736
statistics sampled from 10063 (10070) to 10063 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.309), width: 16
Scan time: 2.440
The best scores are: opt bits E(32554)
CCDS33897.1 PARL gene_id:55486|Hs108|chr3 ( 329) 2285 528.6 2.7e-150
CCDS82878.1 PARL gene_id:55486|Hs108|chr3 ( 295) 1584 369.0 2.6e-102
CCDS3248.1 PARL gene_id:55486|Hs108|chr3 ( 379) 1437 335.6 3.7e-92
>>CCDS33897.1 PARL gene_id:55486|Hs108|chr3 (329 aa)
initn: 2285 init1: 2285 opt: 2285 Z-score: 2811.8 bits: 528.6 E(32554): 2.7e-150
Smith-Waterman score: 2285; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)
10 20 30 40 50 60
pF1KE6 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 CLWRVPSLQRTMIRYFTSNPASSVISNFVSYVGKVATGRYGPSLGASGAIMTVLAAVCTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CLWRVPSLQRTMIRYFTSNPASSVISNFVSYVGKVATGRYGPSLGASGAIMTVLAAVCTK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 IPEGRLAIIFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IPEGRLAIIFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGH
250 260 270 280 290 300
310 320
pF1KE6 ELIWKNREPLVKIWHEIRTNGPKKGGGSK
:::::::::::::::::::::::::::::
CCDS33 ELIWKNREPLVKIWHEIRTNGPKKGGGSK
310 320
>>CCDS82878.1 PARL gene_id:55486|Hs108|chr3 (295 aa)
initn: 1602 init1: 1582 opt: 1584 Z-score: 1950.3 bits: 369.0 E(32554): 2.6e-102
Smith-Waterman score: 1991; 89.7% identity (89.7% similar) in 329 aa overlap (1-329:1-295)
10 20 30 40 50 60
pF1KE6 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 CLWRVPSLQRTMIRYFTSNPASSVISNFVSYVGKVATGRYGPSLGASGAIMTVLAAVCTK
::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CLWRVPSLQRTMIRYFTSNPASSVISNFVSYVGKVATGRYGPSLGA--------------
190 200 210 220
250 260 270 280 290 300
pF1KE6 IPEGRLAIIFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGH
::::::::::::::::::::::::::::::::::::::::
CCDS82 --------------------ALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGH
230 240 250 260
310 320
pF1KE6 ELIWKNREPLVKIWHEIRTNGPKKGGGSK
:::::::::::::::::::::::::::::
CCDS82 ELIWKNREPLVKIWHEIRTNGPKKGGGSK
270 280 290
>>CCDS3248.1 PARL gene_id:55486|Hs108|chr3 (379 aa)
initn: 1457 init1: 1437 opt: 1437 Z-score: 1768.0 bits: 335.6 E(32554): 3.7e-92
Smith-Waterman score: 2039; 85.9% identity (86.1% similar) in 361 aa overlap (1-311:1-361)
10 20 30 40 50 60
pF1KE6 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF
130 140 150 160 170 180
190 200
pF1KE6 CLWRVPSLQRTMIRYFTSNPASSV------------------------------------
::::::::::::::::::::::.:
CCDS32 CLWRVPSLQRTMIRYFTSNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNIL
190 200 210 220 230 240
210 220 230 240 250
pF1KE6 --------------ISNFVSYVGKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIF
::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GQEQFMAVYLSAGVISNFVSYVGKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIF
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE6 LPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGHELIWKNREPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGHELIWKNREPL
310 320 330 340 350 360
320
pF1KE6 VKIWHEIRTNGPKKGGGSK
:
CCDS32 VKIWHEIRTNGPKKGGGSK
370
329 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:46:35 2016 done: Tue Nov 8 12:46:35 2016
Total Scan time: 2.440 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]