Result of FASTA (omim) for
pFN21AE6378
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6378, 307 aa
1>>>pF1KE6378 307 - 307 aa - 307 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5707+/-0.000452; mu= 13.8896+/- 0.028
mean_var=63.8705+/-13.167, 0's: 0 Z-trim(108.8): 42 B-trim: 28 in 1/48
Lambda= 0.160481
statistics sampled from 16880 (16913) to 16880 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.575), E-opt: 0.2 (0.198), width: 16
Scan time: 6.350
The best scores are: opt bits E(85289)
XP_011510978 (OMIM: 612442) PREDICTED: vesicle-tra ( 307) 2054 484.6 1e-136
XP_011510975 (OMIM: 612442) PREDICTED: vesicle-tra ( 307) 2054 484.6 1e-136
XP_011510977 (OMIM: 612442) PREDICTED: vesicle-tra ( 307) 2054 484.6 1e-136
NP_036562 (OMIM: 612442) vesicle-trafficking prote ( 307) 2054 484.6 1e-136
NP_116752 (OMIM: 604028) vesicle-trafficking prote ( 303) 757 184.4 2.5e-46
XP_011532514 (OMIM: 604028) PREDICTED: vesicle-tra ( 303) 757 184.4 2.5e-46
XP_005265591 (OMIM: 604028) PREDICTED: vesicle-tra ( 233) 582 143.8 3.2e-34
XP_005265592 (OMIM: 604028) PREDICTED: vesicle-tra ( 233) 582 143.8 3.2e-34
XP_005265590 (OMIM: 604028) PREDICTED: vesicle-tra ( 233) 582 143.8 3.2e-34
NP_004197 (OMIM: 604028) vesicle-trafficking prote ( 250) 554 137.3 3e-32
NP_001188501 (OMIM: 604028) vesicle-trafficking pr ( 250) 554 137.3 3e-32
NP_001188513 (OMIM: 604028) vesicle-trafficking pr ( 228) 510 127.1 3.2e-29
XP_016862928 (OMIM: 604028) PREDICTED: vesicle-tra ( 180) 379 96.8 3.5e-20
XP_016862927 (OMIM: 604028) PREDICTED: vesicle-tra ( 180) 379 96.8 3.5e-20
XP_016858345 (OMIM: 604029) PREDICTED: vesicle-tra ( 204) 350 90.1 4.1e-18
NP_004883 (OMIM: 604029) vesicle-trafficking prote ( 215) 350 90.1 4.3e-18
XP_016858346 (OMIM: 604029) PREDICTED: vesicle-tra ( 157) 213 58.3 1.2e-08
>>XP_011510978 (OMIM: 612442) PREDICTED: vesicle-traffic (307 aa)
initn: 2054 init1: 2054 opt: 2054 Z-score: 2575.4 bits: 484.6 E(85289): 1e-136
Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG
250 260 270 280 290 300
pF1KE6 KAPDYDV
:::::::
XP_011 KAPDYDV
>>XP_011510975 (OMIM: 612442) PREDICTED: vesicle-traffic (307 aa)
initn: 2054 init1: 2054 opt: 2054 Z-score: 2575.4 bits: 484.6 E(85289): 1e-136
Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG
250 260 270 280 290 300
pF1KE6 KAPDYDV
:::::::
XP_011 KAPDYDV
>>XP_011510977 (OMIM: 612442) PREDICTED: vesicle-traffic (307 aa)
initn: 2054 init1: 2054 opt: 2054 Z-score: 2575.4 bits: 484.6 E(85289): 1e-136
Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG
250 260 270 280 290 300
pF1KE6 KAPDYDV
:::::::
XP_011 KAPDYDV
>>NP_036562 (OMIM: 612442) vesicle-trafficking protein S (307 aa)
initn: 2054 init1: 2054 opt: 2054 Z-score: 2575.4 bits: 484.6 E(85289): 1e-136
Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)
10 20 30 40 50 60
pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG
250 260 270 280 290 300
pF1KE6 KAPDYDV
:::::::
NP_036 KAPDYDV
>>NP_116752 (OMIM: 604028) vesicle-trafficking protein S (303 aa)
initn: 796 init1: 408 opt: 757 Z-score: 952.6 bits: 184.4 E(85289): 2.5e-46
Smith-Waterman score: 757; 40.8% identity (68.3% similar) in 309 aa overlap (1-307:1-303)
10 20 30 40 50 60
pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI
::.:. : :.:::::::::::::. .. . : :. .: :. .::: : : . . ..:
NP_116 MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSI
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 NFISSLG-VSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFI
.: ::.: :. : .:. . : ..:: ::. : :: ..:. . : ::: :.:::..:
NP_116 HF-SSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSII
70 80 90 100 110
120 130 140 150 160 170
pF1KE6 QRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFS-VDCKGAGKI
:..: ..: : . . .: .: :.::.:: ... . :::: .. . . . : ..
NP_116 QKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 SSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAAC
:.::.: ::...::...:.::::::: : : :: .... :.::.. .::
NP_116 -----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQVAHEEIGNILAFLVPFVAC
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE6 LYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQA
..:::: ..:. :..: : . .::: ::::. ::::::..::. :. . . :: ::
NP_116 IFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQILFHIGVAFLSSYQILTRQL
240 250 260 270 280 290
300
pF1KE6 QGKAPDYDV
: : : :
NP_116 QEKQSDCGV
300
>>XP_011532514 (OMIM: 604028) PREDICTED: vesicle-traffic (303 aa)
initn: 796 init1: 408 opt: 757 Z-score: 952.6 bits: 184.4 E(85289): 2.5e-46
Smith-Waterman score: 757; 40.8% identity (68.3% similar) in 309 aa overlap (1-307:1-303)
10 20 30 40 50 60
pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI
::.:. : :.:::::::::::::. .. . : :. .: :. .::: : : . . ..:
XP_011 MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSI
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 NFISSLG-VSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFI
.: ::.: :. : .:. . : ..:: ::. : :: ..:. . : ::: :.:::..:
XP_011 HF-SSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSII
70 80 90 100 110
120 130 140 150 160 170
pF1KE6 QRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFS-VDCKGAGKI
:..: ..: : . . .: .: :.::.:: ... . :::: .. . . . : ..
XP_011 QKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 SSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAAC
:.::.: ::...::...:.::::::: : : :: .... :.::.. .::
XP_011 -----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQVAHEEIGNILAFLVPFVAC
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE6 LYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQA
..:::: ..:. :..: : . .::: ::::. ::::::..::. :. . . :: ::
XP_011 IFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQILFHIGVAFLSSYQILTRQL
240 250 260 270 280 290
300
pF1KE6 QGKAPDYDV
: : : :
XP_011 QEKQSDCGV
300
>>XP_005265591 (OMIM: 604028) PREDICTED: vesicle-traffic (233 aa)
initn: 605 init1: 370 opt: 582 Z-score: 735.5 bits: 143.8 E(85289): 3.2e-34
Smith-Waterman score: 582; 39.1% identity (67.2% similar) in 238 aa overlap (71-307:1-233)
50 60 70 80 90 100
pF1KE6 SRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNM
: .:. . : ..:: ::. : :: ..:.
XP_005 MAICSCQCPAAMAFCFLETLWWEFTASYDT
10 20 30
110 120 130 140 150 160
pF1KE6 MKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGS
. : ::: :.:::..::..: ..: : . . .: .: :.::.:: ... .
XP_005 TCIGLASRPYAFLEFDSIIQKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDV
40 50 60 70 80 90
170 180 190 200 210
pF1KE6 ANGVTSAFS-VDCKGAGKISSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQ
:::: .. . . . : .. :.::.: ::...::...:.::::::: : : ::
XP_005 ANGVMNGHTPMHLEPAPNF-----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQ
100 110 120 130 140
220 230 240 250 260 270
pF1KE6 SDGDDFNYIIAFFLGTAACLYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQL
.... :.::.. .::..:::: ..:. :..: : . .::: ::::. ::::::.
XP_005 VAHEEIGNILAFLVPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQI
150 160 170 180 190 200
280 290 300
pF1KE6 FFHVTVGAFVTLQIWLRQAQGKAPDYDV
.::. :. . . :: :: : : : :
XP_005 LFHIGVAFLSSYQILTRQLQEKQSDCGV
210 220 230
>>XP_005265592 (OMIM: 604028) PREDICTED: vesicle-traffic (233 aa)
initn: 605 init1: 370 opt: 582 Z-score: 735.5 bits: 143.8 E(85289): 3.2e-34
Smith-Waterman score: 582; 39.1% identity (67.2% similar) in 238 aa overlap (71-307:1-233)
50 60 70 80 90 100
pF1KE6 SRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNM
: .:. . : ..:: ::. : :: ..:.
XP_005 MAICSCQCPAAMAFCFLETLWWEFTASYDT
10 20 30
110 120 130 140 150 160
pF1KE6 MKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGS
. : ::: :.:::..::..: ..: : . . .: .: :.::.:: ... .
XP_005 TCIGLASRPYAFLEFDSIIQKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDV
40 50 60 70 80 90
170 180 190 200 210
pF1KE6 ANGVTSAFS-VDCKGAGKISSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQ
:::: .. . . . : .. :.::.: ::...::...:.::::::: : : ::
XP_005 ANGVMNGHTPMHLEPAPNF-----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQ
100 110 120 130 140
220 230 240 250 260 270
pF1KE6 SDGDDFNYIIAFFLGTAACLYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQL
.... :.::.. .::..:::: ..:. :..: : . .::: ::::. ::::::.
XP_005 VAHEEIGNILAFLVPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQI
150 160 170 180 190 200
280 290 300
pF1KE6 FFHVTVGAFVTLQIWLRQAQGKAPDYDV
.::. :. . . :: :: : : : :
XP_005 LFHIGVAFLSSYQILTRQLQEKQSDCGV
210 220 230
>>XP_005265590 (OMIM: 604028) PREDICTED: vesicle-traffic (233 aa)
initn: 605 init1: 370 opt: 582 Z-score: 735.5 bits: 143.8 E(85289): 3.2e-34
Smith-Waterman score: 582; 39.1% identity (67.2% similar) in 238 aa overlap (71-307:1-233)
50 60 70 80 90 100
pF1KE6 SRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNM
: .:. . : ..:: ::. : :: ..:.
XP_005 MAICSCQCPAAMAFCFLETLWWEFTASYDT
10 20 30
110 120 130 140 150 160
pF1KE6 MKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGS
. : ::: :.:::..::..: ..: : . . .: .: :.::.:: ... .
XP_005 TCIGLASRPYAFLEFDSIIQKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDV
40 50 60 70 80 90
170 180 190 200 210
pF1KE6 ANGVTSAFS-VDCKGAGKISSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQ
:::: .. . . . : .. :.::.: ::...::...:.::::::: : : ::
XP_005 ANGVMNGHTPMHLEPAPNF-----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQ
100 110 120 130 140
220 230 240 250 260 270
pF1KE6 SDGDDFNYIIAFFLGTAACLYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQL
.... :.::.. .::..:::: ..:. :..: : . .::: ::::. ::::::.
XP_005 VAHEEIGNILAFLVPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQI
150 160 170 180 190 200
280 290 300
pF1KE6 FFHVTVGAFVTLQIWLRQAQGKAPDYDV
.::. :. . . :: :: : : : :
XP_005 LFHIGVAFLSSYQILTRQLQEKQSDCGV
210 220 230
>>NP_004197 (OMIM: 604028) vesicle-trafficking protein S (250 aa)
initn: 561 init1: 408 opt: 554 Z-score: 700.0 bits: 137.3 E(85289): 3e-32
Smith-Waterman score: 554; 39.1% identity (68.3% similar) in 243 aa overlap (1-241:1-237)
10 20 30 40 50 60
pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI
::.:. : :.:::::::::::::. .. . : :. .: :. .::: : : . . ..:
NP_004 MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSI
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 NFISSLG-VSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFI
.: ::.: :. : .:. . : ..:: ::. : :: ..:. . : ::: :.:::..:
NP_004 HF-SSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSII
70 80 90 100 110
120 130 140 150 160 170
pF1KE6 QRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFS-VDCKGAGKI
:..: ..: : . . .: .: :.::.:: ... . :::: .. . . . : ..
NP_004 QKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 SSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAAC
:.::.: ::...::...:.::::::: : : :: .... :.::.. .::
NP_004 -----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQVAHEEIGNILAFLVPFVAC
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE6 LYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQA
..:
NP_004 IFQDPRSWFCWLDQTS
240 250
307 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:43:45 2016 done: Tue Nov 8 12:43:46 2016
Total Scan time: 6.350 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]