Result of FASTA (omim) for
pFN21AE6369
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6369, 348 aa
1>>>pF1KE6369 348 - 348 aa - 348 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4168+/-0.000419; mu= 21.3473+/- 0.026
mean_var=65.7405+/-14.660, 0's: 0 Z-trim(109.9): 33 B-trim: 1967 in 2/48
Lambda= 0.158182
statistics sampled from 18105 (18137) to 18105 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.213), width: 16
Scan time: 4.440
The best scores are: opt bits E(85289)
NP_000443 (OMIM: 601295,613291) ileal sodium/bile ( 348) 2328 540.5 2.1e-153
NP_932069 (OMIM: 613366) solute carrier family 10 ( 377) 1115 263.7 4.7e-70
NP_003040 (OMIM: 182396) sodium/bile acid cotransp ( 349) 709 171.0 3.5e-42
NP_001135863 (OMIM: 312090) P3 protein isoform 2 p ( 448) 434 108.3 3.3e-23
XP_011529503 (OMIM: 312090) PREDICTED: P3 protein ( 477) 434 108.4 3.4e-23
NP_062822 (OMIM: 312090) P3 protein isoform 1 prec ( 477) 434 108.4 3.4e-23
NP_001135864 (OMIM: 312090) P3 protein isoform 1 p ( 477) 434 108.4 3.4e-23
XP_011529502 (OMIM: 312090) PREDICTED: P3 protein ( 532) 434 108.4 3.7e-23
XP_005277970 (OMIM: 312090) PREDICTED: P3 protein ( 532) 434 108.4 3.7e-23
XP_006724911 (OMIM: 312090) PREDICTED: P3 protein ( 541) 434 108.4 3.7e-23
XP_006724910 (OMIM: 312090) PREDICTED: P3 protein ( 570) 434 108.4 3.8e-23
>>NP_000443 (OMIM: 601295,613291) ileal sodium/bile acid (348 aa)
initn: 2328 init1: 2328 opt: 2328 Z-score: 2875.1 bits: 540.5 E(85289): 2.1e-153
Smith-Waterman score: 2328; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348)
10 20 30 40 50 60
pF1KE6 MNDPNSCVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMFSMGCNVEIKKFLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MNDPNSCVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMFSMGCNVEIKKFLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 HIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCCPGGTASNILAYWVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCCPGGTASNILAYWVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GDMDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GDMDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 FVNHKWPQKAKIILKIGSIAGAILIVLIAVVGGILYQSAWIIAPKLWIIGTIFPVAGYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FVNHKWPQKAKIILKIGSIAGAILIVLIAVVGGILYQSAWIIAPKLWIIGTIFPVAGYSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 GFLLARIAGLPWYRCRTVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIFQLAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GFLLARIAGLPWYRCRTVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIFQLAF
250 260 270 280 290 300
310 320 330 340
pF1KE6 AAIFLGFYVAYKKCHGKNKAEIPESKENGTEPESSFYKANGGFQPDEK
::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AAIFLGFYVAYKKCHGKNKAEIPESKENGTEPESSFYKANGGFQPDEK
310 320 330 340
>>NP_932069 (OMIM: 613366) solute carrier family 10 memb (377 aa)
initn: 1198 init1: 1070 opt: 1115 Z-score: 1378.6 bits: 263.7 E(85289): 4.7e-70
Smith-Waterman score: 1118; 47.9% identity (81.0% similar) in 326 aa overlap (30-345:30-355)
10 20 30 40 50 60
pF1KE6 MNDPNSCVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMFSMGCNVEIKKFLG
: .:...: :....:.:::.::.:::.:. .
NP_932 MRANCSSSSACPANSSEEELPVGLEVHGNLELVFTVVSTVMMGLLMFSLGCSVEIRKLWS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 HIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCCPGGTASNILAYWVD
::.::::: ::.:::::.::.:...:...:.. :.::..:::.::::::: :::...:::
NP_932 HIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVLIMGCCPGGTISNIFTFWVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GDMDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGM
::::::.:::::::. ::::::::. .:: : . ...:::.::: .:: :..::..:.
NP_932 GDMDLSISMTTCSTVAALGMMPLCIYLYTWSWSLQQNLTIPYQNIGITLVCLTIPVAFGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 FVNHKWPQKAKIILKIGSIAGAILIVLIAVVGGILYQSAWIIAPKLWIIGTIFPVAGYSL
.::..::...:::::::...:..:....::.: .: ...: : :. :::. :.
NP_932 YVNYRWPKQSKIILKIGAVVGGVLLLVVAVAGVVLAKGSWNSDITLLTISFIFPLIGHVT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 GFLLARIAGLPWYRCRTVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIFQLAF
::::: .. : ::::...::: :: :.: :..::::: :.: ...::: :..:::
NP_932 GFLLALFTHQSWQRCRTISLETGAQNIQMCITMLQLSFTAEHLVQMLSFPLAYGLFQLID
250 260 270 280 290 300
310 320 330 340
pF1KE6 AAIFLGFYVAYKK----CHGKNKA---EIPESKENGTEPESS-FYKAN--GGFQPDEK
. .... : .::. :::... :. ..... . :.. : ..: :.. :
NP_932 GFLIVAAYQTYKRRLKNKHGKKNSGCTEVCHTRKSTSSRETNAFLEVNEEGAITPGPPGP
310 320 330 340 350 360
NP_932 MDCHRALEPVGHITSCE
370
>>NP_003040 (OMIM: 182396) sodium/bile acid cotransporte (349 aa)
initn: 691 init1: 401 opt: 709 Z-score: 878.3 bits: 171.0 E(85289): 3.5e-42
Smith-Waterman score: 709; 38.4% identity (73.4% similar) in 297 aa overlap (32-322:25-319)
10 20 30 40 50 60
pF1KE6 NDPNSCVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMFSMGCNVEIKKFLGH
..::..:...: ..:.:.::..:..:. .:
NP_003 MEAHNASAPFNFTLPPNFGKRPTDLALSVILVFMLFFIMLSLGCTMEFSKIKAH
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 IKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCCPGGTASNILAYWVDG
. .: :. .... :.::::::.:.:. .: . ..:...:. :: :::. ::... . :
NP_003 LWKPKGLAIALVAQYGIMPLTAFVLGKVFRLKNIEALAILVCGCSPGGNLSNVFSLAMKG
60 70 80 90 100 110
130 140 150 160 170
pF1KE6 DMDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIV--IPYDNIGTSLVALVVPVSIG
::.::. ::::::. ::::::: : ::.. : :.. .:: .: ::: ...: .::
NP_003 DMNLSIVMTTCSTFCALGMMPLLLYIYSRGIYD-GDLKDKVPYKGIVISLVLVLIPCTIG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 MFVNHKWPQKAKIILKIGSIAGAILIVLIAVVGGILYQSAWIIA--PKLWIIGTIFPVAG
. .. : :: . ..: : : . : ..:...: .. ..: : : ....: :
NP_003 IVLKSKRPQYMRYVIKGGMIIILLCSVAVTVLSAINVGKSIMFAMTPLLIATSSLMPFIG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE6 YSLGFLLARIAGLPWYRCR-TVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIF
. ::..:. . : ::: ::..::: ::.::::::....: :: .. .: :::.: ::
NP_003 FLLGYVLSALFCLNG-RCRRTVSMETGCQNVQLCSTILNVAFPPEVIGPLFFFPLLYMIF
240 250 260 270 280 290
300 310 320 330 340
pF1KE6 QLAFAAIFLGFYVAYKKCHG-KNKAEIPESKENGTEPESSFYKANGGFQPDEK
::. . ...... :.: . :.:...
NP_003 QLGEGLLLIAIFWCYEKFKTPKDKTKMIYTAATTEETIPGALGNGTYKGEDCSPCTA
300 310 320 330 340
>>NP_001135863 (OMIM: 312090) P3 protein isoform 2 precu (448 aa)
initn: 336 init1: 225 opt: 434 Z-score: 537.8 bits: 108.3 E(85289): 3.3e-23
Smith-Waterman score: 434; 28.8% identity (64.1% similar) in 281 aa overlap (37-309:163-440)
10 20 30 40 50 60
pF1KE6 CVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMF---SMGCNVEIKKFLGHIK
.: .:: :.. :.::.::.. . : ..
NP_001 ERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIFVNKCSFGCKVELEVLKGLMQ
140 150 160 170 180 190
70 80 90 100 110 120
pF1KE6 RPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCC-PGGTASNILAYWVDGD
: . .:.: :: .::: .:... .: .:: .. ::: : ::: .: ... . ::
NP_001 SPQPMLLGLLGQFLVMPLYAFLMAKVF-MLPKALALGLIITCSSPGGGGSYLFSLLLGGD
200 210 220 230 240 250
130 140 150 160 170 180
pF1KE6 MDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGMFV
. :..::: ::. : :..:: ::... .. .: ..: .:. ...:...:...
NP_001 VTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVPISKILGTLLFIAIPIAVGVLI
260 270 280 290 300 310
190 200 210 220 230
pF1KE6 NHKWPQKAKIILKIGSIAGAILIV---LIAVVGGILYQSAWIIAPKLWIIGTIFPVAGYS
. : :. ....:.. . . .:.. ..: :. . : : : . ..: :..:
NP_001 KSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGV-FILAGIRLP-IVLVGITVPLVGLL
320 330 340 350 360
240 250 260 270 280 290
pF1KE6 LGFLLARIAGLPWYRCRTVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIFQLA
.:. :: :: . :::..:.:.::. : ...:::. . . . :.: .. .
NP_001 VGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLSLRRLQADYASQAPFIVALSGTS
370 380 390 400 410 420
300 310 320 330 340
pF1KE6 -FAAIFLGFYVAYKKCHGKNKAEIPESKENGTEPESSFYKANGGFQPDEK
. :. .: ..
NP_001 EMLALVIGHFIYSSLFPVP
430 440
>>XP_011529503 (OMIM: 312090) PREDICTED: P3 protein isof (477 aa)
initn: 290 init1: 225 opt: 434 Z-score: 537.4 bits: 108.4 E(85289): 3.4e-23
Smith-Waterman score: 434; 28.8% identity (64.1% similar) in 281 aa overlap (37-309:192-469)
10 20 30 40 50 60
pF1KE6 CVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMF---SMGCNVEIKKFLGHIK
.: .:: :.. :.::.::.. . : ..
XP_011 ERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIFVNKCSFGCKVELEVLKGLMQ
170 180 190 200 210 220
70 80 90 100 110 120
pF1KE6 RPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCC-PGGTASNILAYWVDGD
: . .:.: :: .::: .:... .: .:: .. ::: : ::: .: ... . ::
XP_011 SPQPMLLGLLGQFLVMPLYAFLMAKVF-MLPKALALGLIITCSSPGGGGSYLFSLLLGGD
230 240 250 260 270 280
130 140 150 160 170 180
pF1KE6 MDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGMFV
. :..::: ::. : :..:: ::... .. .: ..: .:. ...:...:...
XP_011 VTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVPISKILGTLLFIAIPIAVGVLI
290 300 310 320 330 340
190 200 210 220 230
pF1KE6 NHKWPQKAKIILKIGSIAGAILIV---LIAVVGGILYQSAWIIAPKLWIIGTIFPVAGYS
. : :. ....:.. . . .:.. ..: :. . : : : . ..: :..:
XP_011 KSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGV-FILAGIRLP-IVLVGITVPLVGLL
350 360 370 380 390
240 250 260 270 280 290
pF1KE6 LGFLLARIAGLPWYRCRTVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIFQLA
.:. :: :: . :::..:.:.::. : ...:::. . . . :.: .. .
XP_011 VGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLSLRRLQADYASQAPFIVALSGTS
400 410 420 430 440 450
300 310 320 330 340
pF1KE6 -FAAIFLGFYVAYKKCHGKNKAEIPESKENGTEPESSFYKANGGFQPDEK
. :. .: ..
XP_011 EMLALVIGHFIYSSLFPVP
460 470
>>NP_062822 (OMIM: 312090) P3 protein isoform 1 precurso (477 aa)
initn: 290 init1: 225 opt: 434 Z-score: 537.4 bits: 108.4 E(85289): 3.4e-23
Smith-Waterman score: 434; 28.8% identity (64.1% similar) in 281 aa overlap (37-309:192-469)
10 20 30 40 50 60
pF1KE6 CVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMF---SMGCNVEIKKFLGHIK
.: .:: :.. :.::.::.. . : ..
NP_062 ERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIFVNKCSFGCKVELEVLKGLMQ
170 180 190 200 210 220
70 80 90 100 110 120
pF1KE6 RPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCC-PGGTASNILAYWVDGD
: . .:.: :: .::: .:... .: .:: .. ::: : ::: .: ... . ::
NP_062 SPQPMLLGLLGQFLVMPLYAFLMAKVF-MLPKALALGLIITCSSPGGGGSYLFSLLLGGD
230 240 250 260 270 280
130 140 150 160 170 180
pF1KE6 MDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGMFV
. :..::: ::. : :..:: ::... .. .: ..: .:. ...:...:...
NP_062 VTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVPISKILGTLLFIAIPIAVGVLI
290 300 310 320 330 340
190 200 210 220 230
pF1KE6 NHKWPQKAKIILKIGSIAGAILIV---LIAVVGGILYQSAWIIAPKLWIIGTIFPVAGYS
. : :. ....:.. . . .:.. ..: :. . : : : . ..: :..:
NP_062 KSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGV-FILAGIRLP-IVLVGITVPLVGLL
350 360 370 380 390
240 250 260 270 280 290
pF1KE6 LGFLLARIAGLPWYRCRTVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIFQLA
.:. :: :: . :::..:.:.::. : ...:::. . . . :.: .. .
NP_062 VGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLSLRRLQADYASQAPFIVALSGTS
400 410 420 430 440 450
300 310 320 330 340
pF1KE6 -FAAIFLGFYVAYKKCHGKNKAEIPESKENGTEPESSFYKANGGFQPDEK
. :. .: ..
NP_062 EMLALVIGHFIYSSLFPVP
460 470
>>NP_001135864 (OMIM: 312090) P3 protein isoform 1 precu (477 aa)
initn: 290 init1: 225 opt: 434 Z-score: 537.4 bits: 108.4 E(85289): 3.4e-23
Smith-Waterman score: 434; 28.8% identity (64.1% similar) in 281 aa overlap (37-309:192-469)
10 20 30 40 50 60
pF1KE6 CVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMF---SMGCNVEIKKFLGHIK
.: .:: :.. :.::.::.. . : ..
NP_001 ERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIFVNKCSFGCKVELEVLKGLMQ
170 180 190 200 210 220
70 80 90 100 110 120
pF1KE6 RPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCC-PGGTASNILAYWVDGD
: . .:.: :: .::: .:... .: .:: .. ::: : ::: .: ... . ::
NP_001 SPQPMLLGLLGQFLVMPLYAFLMAKVF-MLPKALALGLIITCSSPGGGGSYLFSLLLGGD
230 240 250 260 270 280
130 140 150 160 170 180
pF1KE6 MDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGMFV
. :..::: ::. : :..:: ::... .. .: ..: .:. ...:...:...
NP_001 VTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVPISKILGTLLFIAIPIAVGVLI
290 300 310 320 330 340
190 200 210 220 230
pF1KE6 NHKWPQKAKIILKIGSIAGAILIV---LIAVVGGILYQSAWIIAPKLWIIGTIFPVAGYS
. : :. ....:.. . . .:.. ..: :. . : : : . ..: :..:
NP_001 KSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGV-FILAGIRLP-IVLVGITVPLVGLL
350 360 370 380 390
240 250 260 270 280 290
pF1KE6 LGFLLARIAGLPWYRCRTVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIFQLA
.:. :: :: . :::..:.:.::. : ...:::. . . . :.: .. .
NP_001 VGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLSLRRLQADYASQAPFIVALSGTS
400 410 420 430 440 450
300 310 320 330 340
pF1KE6 -FAAIFLGFYVAYKKCHGKNKAEIPESKENGTEPESSFYKANGGFQPDEK
. :. .: ..
NP_001 EMLALVIGHFIYSSLFPVP
460 470
>>XP_011529502 (OMIM: 312090) PREDICTED: P3 protein isof (532 aa)
initn: 290 init1: 225 opt: 434 Z-score: 536.8 bits: 108.4 E(85289): 3.7e-23
Smith-Waterman score: 434; 28.8% identity (64.1% similar) in 281 aa overlap (37-309:247-524)
10 20 30 40 50 60
pF1KE6 CVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMF---SMGCNVEIKKFLGHIK
.: .:: :.. :.::.::.. . : ..
XP_011 ERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIFVNKCSFGCKVELEVLKGLMQ
220 230 240 250 260 270
70 80 90 100 110 120
pF1KE6 RPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCC-PGGTASNILAYWVDGD
: . .:.: :: .::: .:... .: .:: .. ::: : ::: .: ... . ::
XP_011 SPQPMLLGLLGQFLVMPLYAFLMAKVF-MLPKALALGLIITCSSPGGGGSYLFSLLLGGD
280 290 300 310 320 330
130 140 150 160 170 180
pF1KE6 MDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGMFV
. :..::: ::. : :..:: ::... .. .: ..: .:. ...:...:...
XP_011 VTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVPISKILGTLLFIAIPIAVGVLI
340 350 360 370 380 390
190 200 210 220 230
pF1KE6 NHKWPQKAKIILKIGSIAGAILIV---LIAVVGGILYQSAWIIAPKLWIIGTIFPVAGYS
. : :. ....:.. . . .:.. ..: :. . : : : . ..: :..:
XP_011 KSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGV-FILAGIRLP-IVLVGITVPLVGLL
400 410 420 430 440 450
240 250 260 270 280 290
pF1KE6 LGFLLARIAGLPWYRCRTVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIFQLA
.:. :: :: . :::..:.:.::. : ...:::. . . . :.: .. .
XP_011 VGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLSLRRLQADYASQAPFIVALSGTS
460 470 480 490 500 510
300 310 320 330 340
pF1KE6 -FAAIFLGFYVAYKKCHGKNKAEIPESKENGTEPESSFYKANGGFQPDEK
. :. .: ..
XP_011 EMLALVIGHFIYSSLFPVP
520 530
>>XP_005277970 (OMIM: 312090) PREDICTED: P3 protein isof (532 aa)
initn: 290 init1: 225 opt: 434 Z-score: 536.8 bits: 108.4 E(85289): 3.7e-23
Smith-Waterman score: 434; 28.8% identity (64.1% similar) in 281 aa overlap (37-309:247-524)
10 20 30 40 50 60
pF1KE6 CVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMF---SMGCNVEIKKFLGHIK
.: .:: :.. :.::.::.. . : ..
XP_005 ERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIFVNKCSFGCKVELEVLKGLMQ
220 230 240 250 260 270
70 80 90 100 110 120
pF1KE6 RPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCC-PGGTASNILAYWVDGD
: . .:.: :: .::: .:... .: .:: .. ::: : ::: .: ... . ::
XP_005 SPQPMLLGLLGQFLVMPLYAFLMAKVF-MLPKALALGLIITCSSPGGGGSYLFSLLLGGD
280 290 300 310 320 330
130 140 150 160 170 180
pF1KE6 MDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGMFV
. :..::: ::. : :..:: ::... .. .: ..: .:. ...:...:...
XP_005 VTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVPISKILGTLLFIAIPIAVGVLI
340 350 360 370 380 390
190 200 210 220 230
pF1KE6 NHKWPQKAKIILKIGSIAGAILIV---LIAVVGGILYQSAWIIAPKLWIIGTIFPVAGYS
. : :. ....:.. . . .:.. ..: :. . : : : . ..: :..:
XP_005 KSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGV-FILAGIRLP-IVLVGITVPLVGLL
400 410 420 430 440 450
240 250 260 270 280 290
pF1KE6 LGFLLARIAGLPWYRCRTVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIFQLA
.:. :: :: . :::..:.:.::. : ...:::. . . . :.: .. .
XP_005 VGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLSLRRLQADYASQAPFIVALSGTS
460 470 480 490 500 510
300 310 320 330 340
pF1KE6 -FAAIFLGFYVAYKKCHGKNKAEIPESKENGTEPESSFYKANGGFQPDEK
. :. .: ..
XP_005 EMLALVIGHFIYSSLFPVP
520 530
>>XP_006724911 (OMIM: 312090) PREDICTED: P3 protein isof (541 aa)
initn: 290 init1: 225 opt: 434 Z-score: 536.7 bits: 108.4 E(85289): 3.7e-23
Smith-Waterman score: 434; 28.8% identity (64.1% similar) in 281 aa overlap (37-309:256-533)
10 20 30 40 50 60
pF1KE6 CVDNATVCSGASCVVPESNFNNILSVVLSTVLTILLALVMF---SMGCNVEIKKFLGHIK
.: .:: :.. :.::.::.. . : ..
XP_006 ERRDFCIKVSPAEDTPATLSADLAHFSENPILYLLLPLIFVNKCSFGCKVELEVLKGLMQ
230 240 250 260 270 280
70 80 90 100 110 120
pF1KE6 RPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCC-PGGTASNILAYWVDGD
: . .:.: :: .::: .:... .: .:: .. ::: : ::: .: ... . ::
XP_006 SPQPMLLGLLGQFLVMPLYAFLMAKVF-MLPKALALGLIITCSSPGGGGSYLFSLLLGGD
290 300 310 320 330 340
130 140 150 160 170 180
pF1KE6 MDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGMFV
. :..::: ::. : :..:: ::... .. .: ..: .:. ...:...:...
XP_006 VTLAISMTFLSTVAATGFLPLSSAIYSRLLSIHETLHVPISKILGTLLFIAIPIAVGVLI
350 360 370 380 390 400
190 200 210 220 230
pF1KE6 NHKWPQKAKIILKIGSIAGAILIV---LIAVVGGILYQSAWIIAPKLWIIGTIFPVAGYS
. : :. ....:.. . . .:.. ..: :. . : : : . ..: :..:
XP_006 KSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGV-FILAGIRLP-IVLVGITVPLVGLL
410 420 430 440 450 460
240 250 260 270 280 290
pF1KE6 LGFLLARIAGLPWYRCRTVAFETGMQNTQLCSTIVQLSFTPEELNVVFTFPLIYSIFQLA
.:. :: :: . :::..:.:.::. : ...:::. . . . :.: .. .
XP_006 VGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLSLRRLQADYASQAPFIVALSGTS
470 480 490 500 510 520
300 310 320 330 340
pF1KE6 -FAAIFLGFYVAYKKCHGKNKAEIPESKENGTEPESSFYKANGGFQPDEK
. :. .: ..
XP_006 EMLALVIGHFIYSSLFPVP
530 540
348 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:32:38 2016 done: Tue Nov 8 12:32:38 2016
Total Scan time: 4.440 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]