FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6368, 361 aa
  1>>>pF1KE6368 361 - 361 aa - 361 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5710+/-0.000734; mu= 15.0894+/- 0.044
 mean_var=67.5515+/-13.813, 0's: 0 Z-trim(108.8): 13  B-trim: 0 in 0/50
 Lambda= 0.156048
 statistics sampled from 10471 (10478) to 10471 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.322), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS1790.1 QPCT gene_id:25797|Hs108|chr2           ( 361) 2456 561.6 3.7e-160
CCDS12672.1 QPCTL gene_id:54814|Hs108|chr19        ( 382) 1081 252.1   6e-67
CCDS54282.1 QPCTL gene_id:54814|Hs108|chr19        ( 288)  672 159.9 2.4e-39


>>CCDS1790.1 QPCT gene_id:25797|Hs108|chr2                (361 aa)
 initn: 2456 init1: 2456 opt: 2456  Z-score: 2988.8  bits: 561.6 E(32554): 3.7e-160
Smith-Waterman score: 2456; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)

               10        20        30        40        50        60
pF1KE6 MAGGRHRRVVGTLHLLLLVAALPWASRGVSPSASAWPEEKNYHQPAILNSSALRQIAEGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MAGGRHRRVVGTLHLLLLVAALPWASRGVSPSASAWPEEKNYHQPAILNSSALRQIAEGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SISEMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SISEMWQNDLQPLLIERYPGSPGSYAARQHIMQRIQRLQADWVLEIDTFLSQTPYGYRSF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SNIISTLNPTAKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SNIISTLNPTAKRHLVLACHYDSKYFSHWNNRVFVGATDSAVPCAMMLELARALDKKLLS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 LKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSLYGSRHLAAKMASTPHPPGARGTSQLHG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 MDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHELGLLKDHSLEGRYFQNYSYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MDLLVLLDLIGAPNPTFPNFFPNSARWFERLQAIEHELHELGLLKDHSLEGRYFQNYSYG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 GVIQDDHIPFLRRGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLEYLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GVIQDDHIPFLRRGVPVLHLIPSPFPEVWHTMDDNEENLDESTIDNLNKILQVFVLEYLH
              310       320       330       340       350       360

        
pF1KE6 L
       :
CCDS17 L
        

>>CCDS12672.1 QPCTL gene_id:54814|Hs108|chr19             (382 aa)
 initn: 1064 init1: 473 opt: 1081  Z-score: 1315.4  bits: 252.1 E(32554): 6e-67
Smith-Waterman score: 1081; 47.8% identity (71.4% similar) in 364 aa overlap (7-361:27-382)

                                   10        20        30          
pF1KE6                     MAGGRHRRVVGTLHLLLLVAALPWASRGVSPSASAW----
                                 ::..  ..:: :. ::  .: .     :.:    
CCDS12 MRSGGRGRPRLRLGERGLMEPLLPPKRRLLPRVRLLPLLLALAVGS-AFYTIWSGWHRRT
               10        20        30        40         50         

            40          50        60        70        80        90 
pF1KE6 ---PEEKNYHQPAI--LNSSALRQIAEGTSISEMWQNDLQPLLIERYPGSPGSYAARQHI
          :  .. . : :  :  . ::...   . ...:.. :.:::. : :::::.  .:. .
CCDS12 EELPLGRELRVPLIGSLPEARLRRVVGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKFL
      60        70        80        90       100       110         

             100       110       120       130       140       150 
pF1KE6 MQRIQRLQADWVLEIDTFLSQTPYGYRSFSNIISTLNPTAKRHLVLACHYDSKYFSHWNN
          .. : : : .:.: : ..:: :  .:.:...::.: : :::.:::::::: :   ..
CCDS12 EATLRSLTAGWHVELDPFTASTPLGPVDFGNVVATLDPRAARHLTLACHYDSKLFPP-GS
     120       130       140       150       160       170         

             160       170       180       190       200       210 
pF1KE6 RVFVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQD
         ::::::::::::..::::.:::   : :. .. .   ..:::.:.:::::. .:.:.:
CCDS12 TPFVGATDSAVPCALLLELAQALD---LELSRAKKQAAPVTLQLLFLDGEEALKEWGPKD
      180       190       200          210       220       230     

             220       230       240       250       260       270 
pF1KE6 SLYGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERL
       :::::::::  : : :: ::    .......:..::::.::::::: . :: ..:::.::
CCDS12 SLYGSRHLAQLMESIPHSPGP---TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRL
         240       250          260       270       280       290  

             280       290       300       310       320       330 
pF1KE6 QAIEHELHELGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLRRGVPVLHLIPSPFPEVWHT
       ..::..::.:.::..:  :  :::     : ..::::::::::::::::: .::: ::::
CCDS12 RSIEKRLHRLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVWHT
            300       310       320       330       340       350  

             340       350       360 
pF1KE6 MDDNEENLDESTIDNLNKILQVFVLEYLHL
         :.: ::   :. :: .:: ::. ::: :
CCDS12 PADTEVNLHPPTVHNLCRILAVFLAEYLGL
            360       370       380  

>>CCDS54282.1 QPCTL gene_id:54814|Hs108|chr19             (288 aa)
 initn: 772 init1: 473 opt: 672  Z-score: 819.7  bits: 159.9 E(32554): 2.4e-39
Smith-Waterman score: 672; 56.2% identity (77.5% similar) in 178 aa overlap (184-361:115-288)

           160       170       180       190       200       210   
pF1KE6 FVGATDSAVPCAMMLELARALDKKLLSLKTVSDSKPDLSLQLIFFDGEEAFLHWSPQDSL
                                     :  . : ..:::.:.:::::. .:.:.:::
CCDS54 VGQLDPQRLWSTYLRPLLVVRTPGSPGNLQVRKAAP-VTLQLLFLDGEEALKEWGPKDSL
           90       100       110       120        130       140   

           220       230       240       250       260       270   
pF1KE6 YGSRHLAAKMASTPHPPGARGTSQLHGMDLLVLLDLIGAPNPTFPNFFPNSARWFERLQA
       :::::::  : : :: ::    .......:..::::.::::::: . :: ..:::.::..
CCDS54 YGSRHLAQLMESIPHSPGP---TRIQAIELFMLLDLLGAPNPTFYSHFPRTVRWFHRLRS
           150       160          170       180       190       200

           280       290       300       310       320       330   
pF1KE6 IEHELHELGLLKDHSLEGRYFQNYSYGGVIQDDHIPFLRRGVPVLHLIPSPFPEVWHTMD
       ::..::.:.::..:  :  :::     : ..::::::::::::::::: .::: ::::  
CCDS54 IEKRLHRLNLLQSHPQEVMYFQPGEPFGSVEDDHIPFLRRGVPVLHLISTPFPAVWHTPA
              210       220       230       240       250       260

           340       350       360 
pF1KE6 DNEENLDESTIDNLNKILQVFVLEYLHL
       :.: ::   :. :: .:: ::. ::: :
CCDS54 DTEVNLHPPTVHNLCRILAVFLAEYLGL
              270       280        




361 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:32:03 2016 done: Tue Nov  8 12:32:03 2016
 Total Scan time:  1.790 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]