Result of FASTA (ccds) for
pFN21AE6360
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6360, 324 aa
1>>>pF1KE6360 324 - 324 aa - 324 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0059+/-0.000572; mu= 14.0348+/- 0.035
mean_var=80.4167+/-16.432, 0's: 0 Z-trim(114.0): 12 B-trim: 0 in 0/54
Lambda= 0.143021
statistics sampled from 14613 (14625) to 14613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.449), width: 16
Scan time: 2.500
The best scores are: opt bits E(32554)
CCDS4231.1 SLC35A4 gene_id:113829|Hs108|chr5 ( 324) 2127 447.5 6.7e-126
CCDS762.1 SLC35A3 gene_id:23443|Hs108|chr1 ( 325) 322 75.0 8.8e-14
CCDS60204.1 SLC35A3 gene_id:23443|Hs108|chr1 ( 367) 322 75.1 9.7e-14
CCDS65253.1 SLC35A2 gene_id:7355|Hs108|chrX ( 332) 294 69.3 4.9e-12
CCDS43937.1 SLC35A2 gene_id:7355|Hs108|chrX ( 393) 295 69.5 4.9e-12
CCDS14311.1 SLC35A2 gene_id:7355|Hs108|chrX ( 396) 295 69.5 4.9e-12
CCDS75973.1 SLC35A2 gene_id:7355|Hs108|chrX ( 406) 295 69.5 5.1e-12
CCDS65254.1 SLC35A2 gene_id:7355|Hs108|chrX ( 421) 295 69.5 5.2e-12
>>CCDS4231.1 SLC35A4 gene_id:113829|Hs108|chr5 (324 aa)
initn: 2127 init1: 2127 opt: 2127 Z-score: 2373.8 bits: 447.5 E(32554): 6.7e-126
Smith-Waterman score: 2127; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)
10 20 30 40 50 60
pF1KE6 MSVEDGGMPGLGRPRQARWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MSVEDGGMPGLGRPRQARWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 KLLLCAFSLLVGWQAWPQGPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVLSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KLLLCAFSLLVGWQAWPQGPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVLSN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 LKIGSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LKIGSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 PLHITPLGLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNLGLHAGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PLHITPLGLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNLGLHAGGG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 SGPGLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SGPGLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRL
250 260 270 280 290 300
310 320
pF1KE6 QLTAAFFLATLLIGLAMRLYYGSR
::::::::::::::::::::::::
CCDS42 QLTAAFFLATLLIGLAMRLYYGSR
310 320
>>CCDS762.1 SLC35A3 gene_id:23443|Hs108|chr1 (325 aa)
initn: 304 init1: 130 opt: 322 Z-score: 360.9 bits: 75.0 E(32554): 8.8e-14
Smith-Waterman score: 322; 30.0% identity (65.8% similar) in 237 aa overlap (89-320:87-312)
60 70 80 90 100 110
pF1KE6 LTKLLLCAFSLLVGWQAWPQGPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVL
.:. . .: .:::. .: .::::
CCDS76 LVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 SNLKIGSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAAS
.::: .::.. : ..:.: : :.:..::. :. . .: :... . .:.:
CCDS76 YQLKILTTALFSVSMLSKKLGVYQWLSLVILMT-GVAF----VQWPSDSQLDSKELSAGS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 PMPLHITPLGLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNL-GLHA
. .::. .. :. ::...:: : ..:. . . ..:. : :: ...: :..
CCDS76 QF------VGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYI
180 190 200 210 220
240 250 260 270 280 290
pF1KE6 GGG---SGPGLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLS
: : :...:.. . .::. :::.::...::.:....: . :..: :.......:
CCDS76 YDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLIS
230 240 250 260 270 280
300 310 320
pF1KE6 AVLLR-LQLTAAFFLATLLIGLAMRLYYGSR
:. . :..:::...:. : ::
CCDS76 YFWLQDFVPTSVFFLGAILVITATFLYGYDPKPAGNPTKA
290 300 310 320
>>CCDS60204.1 SLC35A3 gene_id:23443|Hs108|chr1 (367 aa)
initn: 304 init1: 130 opt: 322 Z-score: 360.1 bits: 75.1 E(32554): 9.7e-14
Smith-Waterman score: 322; 30.0% identity (65.8% similar) in 237 aa overlap (89-320:129-354)
60 70 80 90 100 110
pF1KE6 LTKLLLCAFSLLVGWQAWPQGPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVL
.:. . .: .:::. .: .::::
CCDS60 LVYKDSKCSLRALNRVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVT
100 110 120 130 140 150
120 130 140 150 160 170
pF1KE6 SNLKIGSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAAS
.::: .::.. : ..:.: : :.:..::. :. . .: :... . .:.:
CCDS60 YQLKILTTALFSVSMLSKKLGVYQWLSLVILMT-GVAF----VQWPSDSQLDSKELSAGS
160 170 180 190 200 210
180 190 200 210 220 230
pF1KE6 PMPLHITPLGLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNL-GLHA
. .::. .. :. ::...:: : ..:. . . ..:. : :: ...: :..
CCDS60 QF------VGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYI
220 230 240 250 260
240 250 260 270 280 290
pF1KE6 GGG---SGPGLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLS
: : :...:.. . .::. :::.::...::.:....: . :..: :.......:
CCDS60 YDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIILSTLIS
270 280 290 300 310 320
300 310 320
pF1KE6 AVLLR-LQLTAAFFLATLLIGLAMRLYYGSR
:. . :..:::...:. : ::
CCDS60 YFWLQDFVPTSVFFLGAILVITATFLYGYDPKPAGNPTKA
330 340 350 360
>>CCDS65253.1 SLC35A2 gene_id:7355|Hs108|chrX (332 aa)
initn: 290 init1: 123 opt: 294 Z-score: 329.6 bits: 69.3 E(32554): 4.9e-12
Smith-Waterman score: 294; 33.2% identity (61.8% similar) in 238 aa overlap (89-320:54-277)
60 70 80 90 100 110
pF1KE6 LTKLLLCAFSLLVGWQAWPQGPPPWRQAAPFALSALLYGANNNLVIYLQRYMDPSTYQVL
.:. .:.: .::: . .:.::
CCDS65 EPGTASAGNVKHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYVAISNLPAATFQVT
30 40 50 60 70 80
120 130 140 150 160 170
pF1KE6 SNLKIGSTAVLYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAAS
.::: .::.. : : . :: : .::::.. : .. . :....
CCDS65 YQLKILTTALFSVLMLNRSLSRLQWASLLLLFT-------------GVAIVQAQQAGGGG
90 100 110 120 130
180 190 200 210 220 230
pF1KE6 PMPLHITP-LGLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNL-GLH
: :: .: :: .. :: ::...:: : ..: . . :.:: : ::. :.: ::
CCDS65 PRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGTALGLVGLW
140 150 160 170 180 190
240 250 260 270 280 290
pF1KE6 AGGGSGP---GLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVL
. :.. :.. :.. . :::.::..:::...:.:....: . :..: :.:...:
CCDS65 WAEGTAVATRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVA
200 210 220 230 240 250
300 310 320
pF1KE6 SAVLLRLQLTAAFFL-ATLLIGLAMRLYYGSR
: :. ... : : : :.:: :. ::
CCDS65 SIRLFGFHVDPLFALGAGLVIG-AVYLYSLPRGAAKAIASASASASGPCVHQQPPGQPPP
260 270 280 290 300
>>CCDS43937.1 SLC35A2 gene_id:7355|Hs108|chrX (393 aa)
initn: 290 init1: 123 opt: 295 Z-score: 329.5 bits: 69.5 E(32554): 4.9e-12
Smith-Waterman score: 295; 30.6% identity (59.0% similar) in 288 aa overlap (48-320:65-338)
20 30 40 50 60 70
pF1KE6 RWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGWQAWP
: ..::...:. : : : . :.. ..
CCDS43 LKYISLAVLVVQNASLILSIRYARTLPGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNV
40 50 60 70 80 90
80 90 100 110 120
pF1KE6 QGPPPWRQAA---------PFALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAV
. . . : .:. .:.: .::: . .:.:: .::: .::.
CCDS43 KHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTAL
100 110 120 130 140 150
130 140 150 160 170 180
pF1KE6 LYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITP-L
. : : . :: : .::::.. : .. . :....: :: .:
CCDS43 FSVLMLNRSLSRLQWASLLLLFT-------------GVAIVQAQQAGGGGPRPLDQNPGA
160 170 180 190 200
190 200 210 220 230 240
pF1KE6 GLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNL-GLHAGGGSGP---
:: .. :: ::...:: : ..: . . :.:: : ::. :.: :: . :..
CCDS43 GLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGTALGLVGLWWAEGTAVATR
210 220 230 240 250 260
250 260 270 280 290 300
pF1KE6 GLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRLQLT
:.. :.. . :::.::..:::...:.:....: . :..: :.:...: : :. ...
CCDS43 GFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHVD
270 280 290 300 310 320
310 320
pF1KE6 AAFFL-ATLLIGLAMRLYYGSR
: : : :.:: :. ::
CCDS43 PLFALGAGLVIG-AVYLYSLPRGAAKAIASASASASGPCVHQQPPGQPPPPQLSSHRGDL
330 340 350 360 370 380
>>CCDS14311.1 SLC35A2 gene_id:7355|Hs108|chrX (396 aa)
initn: 290 init1: 123 opt: 295 Z-score: 329.5 bits: 69.5 E(32554): 4.9e-12
Smith-Waterman score: 295; 30.6% identity (59.0% similar) in 288 aa overlap (48-320:65-338)
20 30 40 50 60 70
pF1KE6 RWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGWQAWP
: ..::...:. : : : . :.. ..
CCDS14 LKYISLAVLVVQNASLILSIRYARTLPGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNV
40 50 60 70 80 90
80 90 100 110 120
pF1KE6 QGPPPWRQAA---------PFALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAV
. . . : .:. .:.: .::: . .:.:: .::: .::.
CCDS14 KHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTAL
100 110 120 130 140 150
130 140 150 160 170 180
pF1KE6 LYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITP-L
. : : . :: : .::::.. : .. . :....: :: .:
CCDS14 FSVLMLNRSLSRLQWASLLLLFT-------------GVAIVQAQQAGGGGPRPLDQNPGA
160 170 180 190 200
190 200 210 220 230 240
pF1KE6 GLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNL-GLHAGGGSGP---
:: .. :: ::...:: : ..: . . :.:: : ::. :.: :: . :..
CCDS14 GLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGTALGLVGLWWAEGTAVATR
210 220 230 240 250 260
250 260 270 280 290 300
pF1KE6 GLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRLQLT
:.. :.. . :::.::..:::...:.:....: . :..: :.:...: : :. ...
CCDS14 GFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHVD
270 280 290 300 310 320
310 320
pF1KE6 AAFFL-ATLLIGLAMRLYYGSR
: : : :.:: :. ::
CCDS14 PLFALGAGLVIG-AVYLYSLPRGAAKAIASASASASGPCVHQQPPGQPPPPQLSSHRGDL
330 340 350 360 370 380
>>CCDS75973.1 SLC35A2 gene_id:7355|Hs108|chrX (406 aa)
initn: 290 init1: 123 opt: 295 Z-score: 329.3 bits: 69.5 E(32554): 5.1e-12
Smith-Waterman score: 295; 30.6% identity (59.0% similar) in 288 aa overlap (48-320:78-351)
20 30 40 50 60 70
pF1KE6 RWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGWQAWP
: ..::...:. : : : . :.. ..
CCDS75 LKYISLAVLVVQNASLILSIRYARTLPGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNV
50 60 70 80 90 100
80 90 100 110 120
pF1KE6 QGPPPWRQAA---------PFALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAV
. . . : .:. .:.: .::: . .:.:: .::: .::.
CCDS75 KHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTAL
110 120 130 140 150 160
130 140 150 160 170 180
pF1KE6 LYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITP-L
. : : . :: : .::::.. : .. . :....: :: .:
CCDS75 FSVLMLNRSLSRLQWASLLLLFT-------------GVAIVQAQQAGGGGPRPLDQNPGA
170 180 190 200 210
190 200 210 220 230 240
pF1KE6 GLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNL-GLHAGGGSGP---
:: .. :: ::...:: : ..: . . :.:: : ::. :.: :: . :..
CCDS75 GLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGTALGLVGLWWAEGTAVATR
220 230 240 250 260 270
250 260 270 280 290 300
pF1KE6 GLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRLQLT
:.. :.. . :::.::..:::...:.:....: . :..: :.:...: : :. ...
CCDS75 GFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHVD
280 290 300 310 320 330
310 320
pF1KE6 AAFFL-ATLLIGLAMRLYYGSR
: : : :.:: :. ::
CCDS75 PLFALGAGLVIG-AVYLYSLPRGAAKAIASASASASGPCVHQQPPGQPPPPQLSSHRGDL
340 350 360 370 380 390
>>CCDS65254.1 SLC35A2 gene_id:7355|Hs108|chrX (421 aa)
initn: 280 init1: 113 opt: 295 Z-score: 329.1 bits: 69.5 E(32554): 5.2e-12
Smith-Waterman score: 295; 30.6% identity (59.0% similar) in 288 aa overlap (48-320:93-366)
20 30 40 50 60 70
pF1KE6 RWTLMLLLSTAMYGAHAPLLALCHVDGRVPFRPSSAVLLTELTKLLLCAFSLLVGWQAWP
: ..::...:. : : : . :.. ..
CCDS65 LKYISLAVLVVQNASLILSIRYARTLPGDRFFATTAVVMAEVLKGLTCLLLLFAQKRGNV
70 80 90 100 110 120
80 90 100 110 120
pF1KE6 QGPPPWRQAA---------PFALSALLYGANNNLVIYLQRYMDPSTYQVLSNLKIGSTAV
. . . : .:. .:.: .::: . .:.:: .::: .::.
CCDS65 KHLVLFLHEAVLVQYVDTLKLAVPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTAL
130 140 150 160 170 180
130 140 150 160 170 180
pF1KE6 LYCLCLRHRLSVRQGLALLLLMAAGACYAAGGLQVPGNTLPSPPPAAAASPMPLHITP-L
. : : . :: : .::::.. : .. . :....: :: .:
CCDS65 FSVLMLNRSLSRLQWASLLLLFT-------------GVAIVQAQQAGGGGPRPLDQNPGA
190 200 210 220
190 200 210 220 230 240
pF1KE6 GLLLLILYCLISGLSSVYTELLMKRQRLPLALQNLFLYTFGVLLNL-GLHAGGGSGP---
:: .. :: ::...:: : ..: . . :.:: : ::. :.: :: . :..
CCDS65 GLAAVVASCLSSGFAGVYFEKILKGSSGSVWLRNLQLGLFGTALGLVGLWWAEGTAVATR
230 240 250 260 270 280
250 260 270 280 290 300
pF1KE6 GLLEGFSGWAALVVLSQALNGLLMSAVMKHGSSITRLFVVSCSLVVNAVLSAVLLRLQLT
:.. :.. . :::.::..:::...:.:....: . :..: :.:...: : :. ...
CCDS65 GFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNILKGFATSLSIVLSTVASIRLFGFHVD
290 300 310 320 330 340
310 320
pF1KE6 AAFFL-ATLLIGLAMRLYYGSR
: : : :.:: :. ::
CCDS65 PLFALGAGLVIG-AVYLYSLPRGAAKAIASASASASGPCVHQQPPGQPPPPQLSSHRGDL
350 360 370 380 390 400
324 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:27:20 2016 done: Tue Nov 8 12:27:21 2016
Total Scan time: 2.500 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]