FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6358, 326 aa
  1>>>pF1KE6358 326 - 326 aa - 326 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7232+/-0.000772; mu= 13.7154+/- 0.046
 mean_var=66.1201+/-13.138, 0's: 0 Z-trim(107.8): 12  B-trim: 0 in 0/50
 Lambda= 0.157728
 statistics sampled from 9791 (9796) to 9791 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.301), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS44923.1 APOF gene_id:319|Hs108|chr12           ( 326) 2141 495.8 1.9e-140


>>CCDS44923.1 APOF gene_id:319|Hs108|chr12                (326 aa)
 initn: 2141 init1: 2141 opt: 2141  Z-score: 2634.8  bits: 495.8 E(32554): 1.9e-140
Smith-Waterman score: 2141; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)

               10        20        30        40        50        60
pF1KE6 MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV
              250       260       270       280       290       300

              310       320      
pF1KE6 VSSAPYWGWAIIKSYDLDPGAGSLEI
       ::::::::::::::::::::::::::
CCDS44 VSSAPYWGWAIIKSYDLDPGAGSLEI
              310       320      




326 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:26:08 2016 done: Tue Nov  8 12:26:08 2016
 Total Scan time:  1.920 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]