FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6352, 370 aa
  1>>>pF1KE6352 370 - 370 aa - 370 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1516+/-0.000916; mu= 16.5196+/- 0.055
 mean_var=53.9978+/-11.049, 0's: 0 Z-trim(104.2): 11  B-trim: 54 in 1/48
 Lambda= 0.174536
 statistics sampled from 7792 (7795) to 7792 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.239), width:  16
 Scan time:  1.860

The best scores are:                                      opt bits E(32554)
CCDS6660.1 PSAT1 gene_id:29968|Hs108|chr9          ( 370) 2442 623.0 1.3e-178
CCDS6659.1 PSAT1 gene_id:29968|Hs108|chr9          ( 324) 1924 492.6  2e-139


>>CCDS6660.1 PSAT1 gene_id:29968|Hs108|chr9               (370 aa)
 initn: 2442 init1: 2442 opt: 2442  Z-score: 3320.4  bits: 623.0 E(32554): 1.3e-178
Smith-Waterman score: 2442; 100.0% identity (100.0% similar) in 370 aa overlap (1-370:1-370)

               10        20        30        40        50        60
pF1KE6 MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF
              310       320       330       340       350       360

              370
pF1KE6 MKKFLEMHQL
       ::::::::::
CCDS66 MKKFLEMHQL
              370

>>CCDS6659.1 PSAT1 gene_id:29968|Hs108|chr9               (324 aa)
 initn: 2116 init1: 1920 opt: 1924  Z-score: 2616.4  bits: 492.6 E(32554): 2e-139
Smith-Waterman score: 2028; 87.6% identity (87.6% similar) in 370 aa overlap (1-370:1-324)

               10        20        30        40        50        60
pF1KE6 MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MDAPRQVVNFGPGPAKLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDFIPDVKGAVLVCDMSSN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FLSKPVDVSKFGVIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS66 NTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYV----------
              250       260       270       280       290          

              310       320       330       340       350       360
pF1KE6 MNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF
                                           ::::::::::::::::::::::::
CCDS66 ------------------------------------SVGGIRASLYNAVTIEDVQKLAAF
                                                  300       310    

              370
pF1KE6 MKKFLEMHQL
       ::::::::::
CCDS66 MKKFLEMHQL
          320    




370 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:23:18 2016 done: Tue Nov  8 12:23:18 2016
 Total Scan time:  1.860 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]