FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6344, 355 aa
  1>>>pF1KE6344 355 - 355 aa - 355 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2949+/-0.000952; mu= 16.3168+/- 0.057
 mean_var=64.4766+/-12.955, 0's: 0 Z-trim(104.5): 19  B-trim: 171 in 1/51
 Lambda= 0.159725
 statistics sampled from 7927 (7932) to 7927 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.244), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS2531.1 NDUFA10 gene_id:4705|Hs108|chr2         ( 355) 2387 558.9 2.3e-159


>>CCDS2531.1 NDUFA10 gene_id:4705|Hs108|chr2              (355 aa)
 initn: 2387 init1: 2387 opt: 2387  Z-score: 2974.7  bits: 558.9 E(32554): 2.3e-159
Smith-Waterman score: 2387; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)

               10        20        30        40        50        60
pF1KE6 MALRLLKLAATSASARVVAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MALRLLKLAATSASARVVAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 TVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 TVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 PRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 PRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 KQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 KQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 YKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 YKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQD
              250       260       270       280       290       300

              310       320       330       340       350     
pF1KE6 KFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDKWIWLK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 KFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDKWIWLK
              310       320       330       340       350     




355 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:18:24 2016 done: Tue Nov  8 12:18:24 2016
 Total Scan time:  1.770 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]