Result of FASTA (omim) for
pFN21AE6331
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6331, 399 aa
1>>>pF1KE6331 399 - 399 aa - 399 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0849+/-0.000488; mu= 2.0541+/- 0.030
mean_var=168.1072+/-34.143, 0's: 0 Z-trim(113.2): 170 B-trim: 7 in 2/58
Lambda= 0.098919
statistics sampled from 22267 (22458) to 22267 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.263), width: 16
Scan time: 5.410
The best scores are: opt bits E(85289)
NP_009199 (OMIM: 300353) V-set and immunoglobulin ( 399) 2669 393.7 4.1e-109
NP_001171759 (OMIM: 300353) V-set and immunoglobul ( 321) 2148 319.3 8.2e-87
NP_001244332 (OMIM: 300353) V-set and immunoglobul ( 347) 2141 318.3 1.7e-86
NP_001093901 (OMIM: 300353) V-set and immunoglobul ( 305) 1121 172.7 1e-42
NP_001171760 (OMIM: 300353) V-set and immunoglobul ( 227) 938 146.5 6e-35
XP_016884740 (OMIM: 300353) PREDICTED: V-set and i ( 253) 938 146.6 6.5e-35
NP_005805 (OMIM: 602171) cell surface A33 antigen ( 319) 238 46.7 9.3e-05
XP_011527778 (OMIM: 602621) PREDICTED: coxsackievi ( 348) 219 44.0 0.00065
NP_001193995 (OMIM: 602621) coxsackievirus and ade ( 352) 219 44.1 0.00066
NP_001329 (OMIM: 602621) coxsackievirus and adenov ( 365) 219 44.1 0.00068
>>NP_009199 (OMIM: 300353) V-set and immunoglobulin doma (399 aa)
initn: 2669 init1: 2669 opt: 2669 Z-score: 2080.0 bits: 393.7 E(85289): 4.1e-109
Smith-Waterman score: 2669; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)
10 20 30 40 50 60
pF1KE6 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
310 320 330 340 350 360
370 380 390
pF1KE6 PCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC
:::::::::::::::::::::::::::::::::::::::
NP_009 PCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC
370 380 390
>>NP_001171759 (OMIM: 300353) V-set and immunoglobulin d (321 aa)
initn: 2148 init1: 2148 opt: 2148 Z-score: 1679.5 bits: 319.3 E(85289): 8.2e-87
Smith-Waterman score: 2148; 100.0% identity (100.0% similar) in 321 aa overlap (1-321:1-321)
10 20 30 40 50 60
pF1KE6 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
:::::::::::::::::::::
NP_001 MAYIMLCRKTSQQEHVYEAAR
310 320
>>NP_001244332 (OMIM: 300353) V-set and immunoglobulin d (347 aa)
initn: 2141 init1: 2141 opt: 2141 Z-score: 1673.6 bits: 318.3 E(85289): 1.7e-86
Smith-Waterman score: 2141; 100.0% identity (100.0% similar) in 320 aa overlap (1-320:1-320)
10 20 30 40 50 60
pF1KE6 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
::::::::::::::::::::
NP_001 MAYIMLCRKTSQQEHVYEAASPKCPPTNTGAAGSHWLCPGICQMHLK
310 320 330 340
>>NP_001093901 (OMIM: 300353) V-set and immunoglobulin d (305 aa)
initn: 1112 init1: 1112 opt: 1121 Z-score: 887.7 bits: 172.7 E(85289): 1e-42
Smith-Waterman score: 1843; 76.4% identity (76.4% similar) in 399 aa overlap (1-399:1-305)
10 20 30 40 50 60
pF1KE6 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
:::::::::::::::::
NP_001 DGNQVVRDKITELRVQK-------------------------------------------
130
190 200 210 220 230 240
pF1KE6 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
:: :::::::
NP_001 -----------------------------------------HS----------SKLLKTK
140
250 260 270 280 290 300
pF1KE6 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
150 160 170 180 190 200
310 320 330 340 350 360
pF1KE6 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
210 220 230 240 250 260
370 380 390
pF1KE6 PCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC
:::::::::::::::::::::::::::::::::::::::
NP_001 PCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC
270 280 290 300
>>NP_001171760 (OMIM: 300353) V-set and immunoglobulin d (227 aa)
initn: 938 init1: 938 opt: 938 Z-score: 748.4 bits: 146.5 E(85289): 6e-35
Smith-Waterman score: 1322; 70.7% identity (70.7% similar) in 321 aa overlap (1-321:1-227)
10 20 30 40 50 60
pF1KE6 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
:::::::::::::::::
NP_001 DGNQVVRDKITELRVQK-------------------------------------------
130
190 200 210 220 230 240
pF1KE6 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
:: :::::::
NP_001 -----------------------------------------HS----------SKLLKTK
140
250 260 270 280 290 300
pF1KE6 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
150 160 170 180 190 200
310 320 330 340 350 360
pF1KE6 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
:::::::::::::::::::::
NP_001 MAYIMLCRKTSQQEHVYEAAR
210 220
>>XP_016884740 (OMIM: 300353) PREDICTED: V-set and immun (253 aa)
initn: 938 init1: 938 opt: 938 Z-score: 747.8 bits: 146.6 E(85289): 6.5e-35
Smith-Waterman score: 1315; 70.6% identity (70.6% similar) in 320 aa overlap (1-320:1-226)
10 20 30 40 50 60
pF1KE6 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
:::::::::::::::::
XP_016 DGNQVVRDKITELRVQK-------------------------------------------
130
190 200 210 220 230 240
pF1KE6 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
:: :::::::
XP_016 -----------------------------------------HS----------SKLLKTK
140
250 260 270 280 290 300
pF1KE6 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
150 160 170 180 190 200
310 320 330 340 350 360
pF1KE6 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
::::::::::::::::::::
XP_016 MAYIMLCRKTSQQEHVYEAASPKCPPTNTGAAGSHWLCPGICQMHLK
210 220 230 240 250
>>NP_005805 (OMIM: 602171) cell surface A33 antigen prec (319 aa)
initn: 145 init1: 54 opt: 238 Z-score: 206.4 bits: 46.7 E(85289): 9.3e-05
Smith-Waterman score: 238; 28.7% identity (58.8% similar) in 216 aa overlap (13-220:17-220)
10 20 30 40 50
pF1KE6 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKG-DVNLPCTYDPLQGYTQVLVK
.:::. . .:.:..: .: .:.::::: . . :..
NP_005 MVGKMWPVLWTLCAVRVTVDAIS---VETPQDVLRASQGKSVTLPCTYHTSTSSREGLIQ
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 W--LVQRGSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVP-GDVSLQLSTLEMDDRSHYT
: :. .. :.:. :. ..:. :..:. .:... .:.:. .. : : : . :
NP_005 WDKLLLTHTERVVIWPF-SNKNYIHGELYKNRVSISNNAEQSDASITIDQLTMADNGTYE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 CEVTWQTP-DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQAR-GS
: :. .. .:: :. ::. : . :. . : :. : :.: ::.. ::
NP_005 CSVSLMSDLEGN-------TKSRVRLLVLVPPSKPECGIEGETII-GNNIQLTCQSKEGS
120 130 140 150 160
180 190 200 210 220
pF1KE6 PPISYIWYKQQTNNQE-PI-KVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKF
: .: : . . ::: :. . :. . . .: :: :.::.... :..
NP_005 PTPQYSWKRYNILNQEQPLAQPASGQPVSLKNISTDTSGYYICTSSNEEGTQFCNITVAV
170 180 190 200 210 220
230 240 250 260 270 280
pF1KE6 VVKDSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAII
NP_005 RSPSMNVALYVGIAVGVVAALIIIGIIIYCCCCRGKDDNTEDKEDARPNREAYEEPPEQL
230 240 250 260 270 280
>>XP_011527778 (OMIM: 602621) PREDICTED: coxsackievirus (348 aa)
initn: 98 init1: 69 opt: 219 Z-score: 191.2 bits: 44.0 E(85289): 0.00065
Smith-Waterman score: 219; 27.6% identity (58.2% similar) in 239 aa overlap (1-221:1-222)
10 20 30 40 50
pF1KE6 MGILLGLLLLGHLTVDTYGRPI-LEVPESVTGPWKGDVN-LPC--TYDPL-QGYTQVLVK
:..:: ..:: . :: ..: . . .:: . ::.. ::: : .: :: . ..
XP_011 MALLLCFVLLCGV-VD-FARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLD--IE
10 20 30 40 50
60 70 80 90 100
pF1KE6 WLVQRGS----DPVTIFLRDSSGDHIQQAKY---QGRLHVSHK--VPGDVSLQLSTLEMD
::.. .. : : :. :::.: . : .::.: . . ::.:.....:...
XP_011 WLISPADNQKVDQVIILY---SGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLS
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE6 DRSHYTCEVTWQTPDGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQ
: . : :.: ..: ... ... . . ::. . : . : ....:.
XP_011 DIGTYQCKVK-KAPG--------VANKKIHLVVLVKPSGARCYVDG-SEEIGSDFKIKCE
120 130 140 150 160
170 180 190 200 210 220
pF1KE6 AR-GSPPISYIWYKQQTNNQEP---IKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQH
. :: :..: : : . ... : . : :.. : : ::.: ::....:::.:
XP_011 PKEGSLPLQYEWQKLSDSQKMPTSWLAEMTSSVISVKNASSEYSGTYSCTVRNRVGSDQC
170 180 190 200 210 220
230 240 250 260 270 280
pF1KE6 SDIVKFVVKDSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSL
XP_011 LLRLNVVPPSNKAGLIAGAIIGTLLALALIGLIIFCCRKKRREEKYEKEVHHDIREDVPP
230 240 250 260 270 280
>>NP_001193995 (OMIM: 602621) coxsackievirus and adenovi (352 aa)
initn: 98 init1: 69 opt: 219 Z-score: 191.2 bits: 44.1 E(85289): 0.00066
Smith-Waterman score: 219; 27.6% identity (58.2% similar) in 239 aa overlap (1-221:1-222)
10 20 30 40 50
pF1KE6 MGILLGLLLLGHLTVDTYGRPI-LEVPESVTGPWKGDVN-LPC--TYDPL-QGYTQVLVK
:..:: ..:: . :: ..: . . .:: . ::.. ::: : .: :: . ..
NP_001 MALLLCFVLLCGV-VD-FARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLD--IE
10 20 30 40 50
60 70 80 90 100
pF1KE6 WLVQRGS----DPVTIFLRDSSGDHIQQAKY---QGRLHVSHK--VPGDVSLQLSTLEMD
::.. .. : : :. :::.: . : .::.: . . ::.:.....:...
NP_001 WLISPADNQKVDQVIILY---SGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLS
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE6 DRSHYTCEVTWQTPDGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQ
: . : :.: ..: ... ... . . ::. . : . : ....:.
NP_001 DIGTYQCKVK-KAPG--------VANKKIHLVVLVKPSGARCYVDG-SEEIGSDFKIKCE
120 130 140 150 160
170 180 190 200 210 220
pF1KE6 AR-GSPPISYIWYKQQTNNQEP---IKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQH
. :: :..: : : . ... : . : :.. : : ::.: ::....:::.:
NP_001 PKEGSLPLQYEWQKLSDSQKMPTSWLAEMTSSVISVKNASSEYSGTYSCTVRNRVGSDQC
170 180 190 200 210 220
230 240 250 260 270 280
pF1KE6 SDIVKFVVKDSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSL
NP_001 LLRLNVVPPSNKAGLIAGAIIGTLLALALIGLIIFCCRKKRREEKYEKEVHHDIREDVPP
230 240 250 260 270 280
>>NP_001329 (OMIM: 602621) coxsackievirus and adenovirus (365 aa)
initn: 98 init1: 69 opt: 219 Z-score: 190.9 bits: 44.1 E(85289): 0.00068
Smith-Waterman score: 219; 27.6% identity (58.2% similar) in 239 aa overlap (1-221:1-222)
10 20 30 40 50
pF1KE6 MGILLGLLLLGHLTVDTYGRPI-LEVPESVTGPWKGDVN-LPC--TYDPL-QGYTQVLVK
:..:: ..:: . :: ..: . . .:: . ::.. ::: : .: :: . ..
NP_001 MALLLCFVLLCGV-VD-FARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLD--IE
10 20 30 40 50
60 70 80 90 100
pF1KE6 WLVQRGS----DPVTIFLRDSSGDHIQQAKY---QGRLHVSHK--VPGDVSLQLSTLEMD
::.. .. : : :. :::.: . : .::.: . . ::.:.....:...
NP_001 WLISPADNQKVDQVIILY---SGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLS
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE6 DRSHYTCEVTWQTPDGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQ
: . : :.: ..: ... ... . . ::. . : . : ....:.
NP_001 DIGTYQCKVK-KAPG--------VANKKIHLVVLVKPSGARCYVDG-SEEIGSDFKIKCE
120 130 140 150 160
170 180 190 200 210 220
pF1KE6 AR-GSPPISYIWYKQQTNNQEP---IKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQH
. :: :..: : : . ... : . : :.. : : ::.: ::....:::.:
NP_001 PKEGSLPLQYEWQKLSDSQKMPTSWLAEMTSSVISVKNASSEYSGTYSCTVRNRVGSDQC
170 180 190 200 210 220
230 240 250 260 270 280
pF1KE6 SDIVKFVVKDSSKLLKTKTEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSL
NP_001 LLRLNVVPPSNKAGLIAGAIIGTLLALALIGLIIFCCRKKRREEKYEKEVHHDIREDVPP
230 240 250 260 270 280
399 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 12:10:57 2016 done: Tue Nov 8 12:10:58 2016
Total Scan time: 5.410 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]