FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6331, 399 aa
  1>>>pF1KE6331 399 - 399 aa - 399 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6344+/-0.00103; mu= 4.6086+/- 0.061
 mean_var=123.3553+/-24.387, 0's: 0 Z-trim(106.6): 100  B-trim: 2 in 1/52
 Lambda= 0.115477
 statistics sampled from 8951 (9055) to 8951 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.642), E-opt: 0.2 (0.278), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS14383.1 VSIG4 gene_id:11326|Hs108|chrX         ( 399) 2669 456.2 2.4e-128
CCDS55435.1 VSIG4 gene_id:11326|Hs108|chrX         ( 321) 2148 369.4 2.6e-102
CCDS48132.1 VSIG4 gene_id:11326|Hs108|chrX         ( 305) 1121 198.3 8.1e-51


>>CCDS14383.1 VSIG4 gene_id:11326|Hs108|chrX              (399 aa)
 initn: 2669 init1: 2669 opt: 2669  Z-score: 2417.7  bits: 456.2 E(32554): 2.4e-128
Smith-Waterman score: 2669; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399)

               10        20        30        40        50        60
pF1KE6 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
              310       320       330       340       350       360

              370       380       390         
pF1KE6 PCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC
       :::::::::::::::::::::::::::::::::::::::
CCDS14 PCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC
              370       380       390         

>>CCDS55435.1 VSIG4 gene_id:11326|Hs108|chrX              (321 aa)
 initn: 2148 init1: 2148 opt: 2148  Z-score: 1950.2  bits: 369.4 E(32554): 2.6e-102
Smith-Waterman score: 2148; 100.0% identity (100.0% similar) in 321 aa overlap (1-321:1-321)

               10        20        30        40        50        60
pF1KE6 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
       :::::::::::::::::::::                                       
CCDS55 MAYIMLCRKTSQQEHVYEAAR                                       
              310       320                                        

>>CCDS48132.1 VSIG4 gene_id:11326|Hs108|chrX              (305 aa)
 initn: 1112 init1: 1112 opt: 1121  Z-score: 1025.8  bits: 198.3 E(32554): 8.1e-51
Smith-Waterman score: 1843; 76.4% identity (76.4% similar) in 399 aa overlap (1-399:1-305)

               10        20        30        40        50        60
pF1KE6 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MGILLGLLLLGHLTVDTYGRPILEVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GSDPVTIFLRDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DGNQVVRDKITELRVQKLSVSKPTVTTGSGYGFTVPQGMRISLQCQARGSPPISYIWYKQ
       :::::::::::::::::                                           
CCDS48 DGNQVVRDKITELRVQK-------------------------------------------
              130                                                  

              190       200       210       220       230       240
pF1KE6 QTNNQEPIKVATLSTLLFKPAVIADSGSYFCTAKGQVGSEQHSDIVKFVVKDSSKLLKTK
                                                ::          :::::::
CCDS48 -----------------------------------------HS----------SKLLKTK
                                                          140      

              250       260       270       280       290       300
pF1KE6 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TEAPTTMTYPLKATSTVKQSWDWTTDMDGYLGETSAGPGKSLPVFAIILIISLCCMVVFT
        150       160       170       180       190       200      

              310       320       330       340       350       360
pF1KE6 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MAYIMLCRKTSQQEHVYEAARAHAREANDSGETMRVAIFASGCSSDEPTSQNLGNNYSDE
        210       220       230       240       250       260      

              370       380       390         
pF1KE6 PCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC
       :::::::::::::::::::::::::::::::::::::::
CCDS48 PCIGQEYQIIAQINGNYARLLDTVPLDYEFLATEGKSVC
        270       280       290       300     




399 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:10:57 2016 done: Tue Nov  8 12:10:57 2016
 Total Scan time:  1.950 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]