FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6330, 390 aa
  1>>>pF1KE6330 390 - 390 aa - 390 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3346+/-0.00088; mu= -0.2135+/- 0.053
 mean_var=237.4329+/-48.500, 0's: 0 Z-trim(114.7): 46  B-trim: 0 in 0/53
 Lambda= 0.083235
 statistics sampled from 15239 (15282) to 15239 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.469), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS8453.1 ESAM gene_id:90952|Hs108|chr11          ( 390) 2596 324.2 1.3e-88


>>CCDS8453.1 ESAM gene_id:90952|Hs108|chr11               (390 aa)
 initn: 2596 init1: 2596 opt: 2596  Z-score: 1704.6  bits: 324.2 E(32554): 1.3e-88
Smith-Waterman score: 2596; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390)

               10        20        30        40        50        60
pF1KE6 MISLPGPLVTNLLRFLFLGLSALAPPSRAQLQLHLPANRLQAVEGGEVVLPAWYTLHGEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MISLPGPLVTNLLRFLFLGLSALAPPSRAQLQLHLPANRLQAVEGGEVVLPAWYTLHGEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SSSQPWEVPFVMWFFKQKEKEDQVLSYINGVTTSKPGVSLVYSMPSRNLSLRLEGLQEKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 SSSQPWEVPFVMWFFKQKEKEDQVLSYINGVTTSKPGVSLVYSMPSRNLSLRLEGLQEKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 SGPYSCSVNVQDKQGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLSCQSPRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 SGPYSCSVNVQDKQGKSRGHSIKTLELNVLVPPAPPSCRLQGVPHVGANVTLSCQSPRSK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 PAVQYQWDRQLPSFQTFFAPALDVIRGSLSLTNLSSSMAGVYVCKAHNEVGTAQCNVTLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 PAVQYQWDRQLPSFQTFFAPALDVIRGSLSLTNLSSSMAGVYVCKAHNEVGTAQCNVTLE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 VSTGPGAAVVAGAVVGTLVGLGLLAGLVLLYHRRGKALEEPANDIKEDAIAPRTLPWPKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VSTGPGAAVVAGAVVGTLVGLGLLAGLVLLYHRRGKALEEPANDIKEDAIAPRTLPWPKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 SDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSPRLPTTDGAHPQPISP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 SDTISKNGTLSSVTSARALRPPHGPPRPGALTPTPSLSSQALPSPRLPTTDGAHPQPISP
              310       320       330       340       350       360

              370       380       390
pF1KE6 IPGGVSSSGLSRMGAVPVMVPAQSQAGSLV
       ::::::::::::::::::::::::::::::
CCDS84 IPGGVSSSGLSRMGAVPVMVPAQSQAGSLV
              370       380       390




390 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:10:26 2016 done: Tue Nov  8 12:10:26 2016
 Total Scan time:  2.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]