FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6325, 435 aa
  1>>>pF1KE6325 435 - 435 aa - 435 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0124+/-0.00113; mu= 9.4022+/- 0.067
 mean_var=114.0238+/-23.032, 0's: 0 Z-trim(105.4): 43  B-trim: 87 in 2/50
 Lambda= 0.120109
 statistics sampled from 8370 (8385) to 8370 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.258), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS44950.1 RASSF9 gene_id:9182|Hs108|chr12        ( 435) 2841 503.6 1.6e-142


>>CCDS44950.1 RASSF9 gene_id:9182|Hs108|chr12             (435 aa)
 initn: 2841 init1: 2841 opt: 2841  Z-score: 2672.4  bits: 503.6 E(32554): 1.6e-142
Smith-Waterman score: 2841; 100.0% identity (100.0% similar) in 435 aa overlap (1-435:1-435)

               10        20        30        40        50        60
pF1KE6 MAPFGRNLLKTRHKNRSPTKDMDSEEKEIVVWVCQEEKLVCGLTKRTTSADVIQALLEEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAPFGRNLLKTRHKNRSPTKDMDSEEKEIVVWVCQEEKLVCGLTKRTTSADVIQALLEEH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 EATFGEKRFLLGKPSDYCIIEKWRGSERVLPPLTRILKLWKAWGDEQPNMQFVLVKADAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EATFGEKRFLLGKPSDYCIIEKWRGSERVLPPLTRILKLWKAWGDEQPNMQFVLVKADAF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 LPVPLWRTAEAKLVQNTEKLWELSPANYMKTLPPDKQKRIVRKTFRKLAKIKQDTVSHDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPVPLWRTAEAKLVQNTEKLWELSPANYMKTLPPDKQKRIVRKTFRKLAKIKQDTVSHDR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 DNMETLVHLIISQDHTIHQQVKRMKELDLEIEKCEAKFHLDRVENDGENYVQDAYLMPSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DNMETLVHLIISQDHTIHQQVKRMKELDLEIEKCEAKFHLDRVENDGENYVQDAYLMPSF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 SEVEQNLDLQYEENQTLEDLSESDGIEQLEERLKYYRILIDKLSAEIEKEVKSVCIDINE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SEVEQNLDLQYEENQTLEDLSESDGIEQLEERLKYYRILIDKLSAEIEKEVKSVCIDINE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE6 DAEGEAASELESSNLESVKCDLEKSMKAGLKIHSHLSGIQKEIKYSDSLLQMKAKEYELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DAEGEAASELESSNLESVKCDLEKSMKAGLKIHSHLSGIQKEIKYSDSLLQMKAKEYELL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE6 AKEFNSLHISNKDGCQLKENRAKESEVPSSNGEIPPFTQRVFSNYTNDTDSDTGISSNHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AKEFNSLHISNKDGCQLKENRAKESEVPSSNGEIPPFTQRVFSNYTNDTDSDTGISSNHS
              370       380       390       400       410       420

              430     
pF1KE6 QDSETTVGDVVLLST
       :::::::::::::::
CCDS44 QDSETTVGDVVLLST
              430     




435 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 12:07:19 2016 done: Tue Nov  8 12:07:20 2016
 Total Scan time:  2.660 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]